Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi827g00016 ATGGAGTTGAAGGGAAGAGACAGGAAAGTAGTGAAGCCAGACATGGATTGGAATCAAAACTCAAGACACTTGGTTCCTCGGGCAGAGTCTTCCTTAAGCTTCTTCTGCCACTATAACAACAACCCATATTCAGGAATGGAAGTGAAACAACCAGCATTAGGAGAGACAGCACAAAGGTTGCTCCCACCAATGGAGAATGGAAGCCGGGAGAAGAAGAAGAGATTAACAAATAACCAGATTGAGTTACTTGAGAGGAGTTTCCATGAGGAGATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCAAAGGAGCTAGGACTCCCACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAGGCCAAGCAACTTGAGCACTTGTACGATATGCTTAAACATGAATTTGATGCCATCTGCAAGGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAAGGCTAAGAGAGCAAGCATTCAGGACACAAACATTAGCTGGTTATACAGAAATCTCTGGGGAAGAAACAGTAGAAAGCACATCAGAGGCGGCGCGTGGTTGTGGTTCCAAGAAGTCACAAGGAACTAGTAACATTCAGCAGGCTACAGAGGCAGAGGGATACTGTTGTTTCACTGTGGAAGATTATAACTCAGTTTCAATGGCTCAGTACCATTGGCCTGTTGTGCCTTATAATAATTGTCCCTAA 720 0.4417 MELKGRDRKVVKPDMDWNQNSRHLVPRAESSLSFFCHYNNNPYSGMEVKQPALGETAQRLLPPMENGSREKKKRLTNNQIELLERSFHEEIKLDPERKMKLSKELGLPPRQIAVWFQNRRTRWKAKQLEHLYDMLKHEFDAICKEKQKLQEEVMKLKARLREQAFRTQTLAGYTEISGEETVESTSEAARGCGSKKSQGTSNIQQATEAEGYCCFTVEDYNSVSMAQYHWPVVPYNNCP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi827g00016 239 Coils Coil 132 166 - -
Sebi827g00016 239 MobiDBLite consensus disorder prediction 182 201 - -
Sebi827g00016 239 Gene3D - 64 132 - -
Sebi827g00016 239 FunFam Putative homeobox-leucine zipper protein ATHB-51 68 131 - -
Sebi827g00016 239 SUPERFAMILY Homeodomain-like 61 128 IPR009057 -
Sebi827g00016 239 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Sebi827g00016 239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 65 201 IPR045224 GO:0003700
Sebi827g00016 239 Pfam Homeodomain 69 124 IPR001356 GO:0003677
Sebi827g00016 239 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981|GO:0006355
Sebi827g00016 239 SMART HOX_1 68 130 IPR001356 GO:0003677
Sebi827g00016 239 CDD homeodomain 69 127 IPR001356 GO:0003677
Sebi827g00016 239 PRINTS Lambda-repressor HTH signature 106 122 IPR000047 GO:0003677
Sebi827g00016 239 PRINTS Lambda-repressor HTH signature 97 106 IPR000047 GO:0003677
Sebi827g00016 239 Pfam Homeobox associated leucine zipper 126 160 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi827g00016 Sebi-Chr827 280239 281847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi827g00016 66 164 Homeobox Transcription Factor Family AT2G36610 59.813 1.06e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi827g00016 Homeodomain 7.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi827g00016 - - ccaj:109798071 292.737