Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi827g00008 ATGGCATTGGTTTTGGTTTTGACCTTGTTGTTGGCATTCCTCTGCGTGGCACAGAGTGCACCCCAGAATGATACACACGCCCTCACCCAATTCCGCCTCCAAACCGACACTCACGGTTACCTCCTCGGTAACTGGACAACCGGCGACGCTTGCACCGCCGCATGGCGCGGCGTTGAATGCTCCCCAAACGGCAGAGTAGTGGGTCTCTCCATTCCTTCCCTCAATCTCCGAGGCCCAATTGATTCTCTTTCACCACTCTCCTACTTGCGCCTGGAACTCCTCTACCTCGCCGGCAACGACTTCTCCGGCGAGATACCGCCGGAGATTGCTTCCCTGAGACTCCTCCTCAGGCTTGACCTCTCCGATAACAACATCCGCGGCCCAATCCCTAACGAACTCTTGAAGCTAACTCATCTTCTCACACTTCGTCTTCAGAACAATGCATTCTCTGGCCAAGTCCCTGATCTTTCTTCTTCCCTTCTCAACCTCAGCGAACTCAACATCACCAACAACGAACTCCATGGACACTTACCCGACGCCATGTTCAAGAAATTCGGCAATGCAAGCTTCTCCGGCAACGACGGTCTTTGTGGGCCAACTCCATTGCCGAAAAAGGGGTTGAATCCTGGAACCATTGTGGCGATTGTGGTGGCGGTTTCTGTGGCTTTAGTGGTGGCGATATCTTTTGCGGTGGCTCATTGTTGTGCCAGGGGAGGAAGCTCGAACTCGACGGTGGGGAGTGAGAGTGGGAAGAGGAAGAGTGAGAGTAGCTATGGAAGCGAGAAGAAGGGGTATTGTGCAACTGGTGGTGTGGATAGAGATAGTGATGGGACGTGTACTGAGACAGAACGAAGCAAGCTTGTGTTTTTTGATAGGAAGAGGAACCGTGGTCCAGGAAGGATTCCATTAGATTGGACCACAAGAATAAGTTTGGTATTGGGGGCAGCAAGAGGGCTAGCTAGGATTCATGCAGAGTATAATGCAGCCAAGATACCTCACGGGAATGTTAAATCTTCCAATGTGCTTCTTGACAAGAATGGGGTTGCTTGCATCTCTGACTTTGGGTTGTCACTACTGTTGAACCCTGTTCATGCCATTGCGAGATTGGGTGGGTACAGAGCTCCTGAACAAGCAGAGGTGAAGAAGCTGTCTCAGGAAGCTGACGTGTACAGTTTTGGTGTATTGTTGTTGGAGGTTCTCACAGGGAGAGCTCCTTCTCTGTATCCTTCTCCAGCTCGTCCTAGAGTGGAGTTAGAGGAACAAGAAGTGGATCTTCCCAAATGGGTAAGGTCGGTTGTGAAGGAAGAGTGGACTTCAGAGGTGTTTGATCAGGAACTGTTGAGGTACAAGAATATTGAGGAAGAGCTTGTGTCCATGCTGAATGTGGGGTTGGCTTGTGTGGTGCCACAACCTGAGAAAAGGCCAAACATGTTGGAAGTTGTGAAGATGATTGAAGATATAAGGGTGGAACAATCTCCTCTTAGAGGAGAGGATTATGATGAATCACGCAATTCACTCTCACCCTCACTTGCCACCACTGAAGATGGATTGGCTTAA 1557 0.5022 MALVLVLTLLLAFLCVAQSAPQNDTHALTQFRLQTDTHGYLLGNWTTGDACTAAWRGVECSPNGRVVGLSIPSLNLRGPIDSLSPLSYLRLELLYLAGNDFSGEIPPEIASLRLLLRLDLSDNNIRGPIPNELLKLTHLLTLRLQNNAFSGQVPDLSSSLLNLSELNITNNELHGHLPDAMFKKFGNASFSGNDGLCGPTPLPKKGLNPGTIVAIVVAVSVALVVAISFAVAHCCARGGSSNSTVGSESGKRKSESSYGSEKKGYCATGGVDRDSDGTCTETERSKLVFFDRKRNRGPGRIPLDWTTRISLVLGAARGLARIHAEYNAAKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQAEVKKLSQEADVYSFGVLLLEVLTGRAPSLYPSPARPRVELEEQEVDLPKWVRSVVKEEWTSEVFDQELLRYKNIEEELVSMLNVGLACVVPQPEKRPNMLEVVKMIEDIRVEQSPLRGEDYDESRNSLSPSLATTEDGLA 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi827g00008 518 Gene3D Transferase(Phosphotransferase) domain 1 289 507 - -
Sebi827g00008 518 MobiDBLite consensus disorder prediction 493 518 - -
Sebi827g00008 518 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Sebi827g00008 518 Pfam Protein kinase domain 312 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi827g00008 518 Gene3D Ribonuclease Inhibitor 21 204 IPR032675 -
Sebi827g00008 518 MobiDBLite consensus disorder prediction 238 253 - -
Sebi827g00008 518 SUPERFAMILY Protein kinase-like (PK-like) 295 484 IPR011009 -
Sebi827g00008 518 SUPERFAMILY L domain-like 22 185 - -
Sebi827g00008 518 ProSiteProfiles Protein kinase domain profile. 91 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi827g00008 518 MobiDBLite consensus disorder prediction 238 263 - -
Sebi827g00008 518 FunFam Nuclear pore complex protein NUP107 21 179 - -
Sebi827g00008 518 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 300 489 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi827g00008 Sebi-Chr827 166200 168749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi827g00008 295 514 Receptor kinase-like Gene Family AT2G36570 80.617 1.39e-122 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi827g00008 Pkinase 1.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi827g00008 - - ccaj:109796875 437.573