Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi826g00005 ATGTCCACTAACCACTTATCAAATGGCGACTCCGAGTCCCTCCTTCGCCGACCCTTGCTCTCTTCTCAAAGATCCATTGTTAACTCCACTTCCCAGGTTGCCATCGTTGGTGCCAATGTCTGCCCTATCGAGAGCCTCGACTATGAGATCTTTGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGTTGGTTCAGATATTTCAGTACATATTTATGAAATGGCTCTTGTGCTTTTTAATTGGTATGATCCTTGGCCTTGTCGGGTTCTGCAACAATCTCGCTGTTGAGAATCTCGCTGGTATGAAGTTTGTGATCACATCCAATATGATGTTGGAGGGGAGGTTTCTGTTGGCATTTGTAACATTTTTTGCTTCAAATTTGTGTCTCACGCTTTTTGCCTCTATAATAACGGCTTTGATAGCACCTACTGCAGCCGGTTCAGGTATACCAGAGGTGAAGGCTTACCTAAATGGTGTAGATGCACCTGGAATATTCACTGTACGAACTCTATTCGTTAAGATTATTGGAAGCATTACGGCAGTGTCATCATCTCTTCTTATTGGGAAGGCAGGGCCTATGGTGCATACAGGTGCATGTGTGGCGGCGTTGTTGGGTCAGGGTGGGTCAAAGAGACATGGGTTTACATGGAAATGGTTACGGTTTTTTAAGAATGACCGAGATCGACGAGATATAATAACATGTGGATCAGCAGCTGGAATGGCTGCTGCCTTCCGTGCGCCTGTTGGTGGGGTGTTGTTTACTCTTGAAGAGATGGCATCTTGGTGGAGAACCGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCGATTTTTCTTCGTGCTATGATTGATATATGTCTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATACAGCAAGTATTTCATATCATTCGGCGGACATTCCTCTTGTGTTTTTTCTTGGTGTTATAGGGGGGATACTTGGAAGCATATATAATTATATGTTGAACAAAGTTCTTCGCATATACAATGTTATCAATGAGAAAGGAACCATTTGCAAAATTTTGCTTGCTTGTTTAATCTCCATTTTTACATCATGTCTTCTTTTTGGATTGCCATGGCTTGCATCTTGCCGACCTTGTCCACCTGATGCAGTTGAGCCTTGTCCCACAATAGGTCGGTCTGGTATCTACAAGAAATTCCAATGCCCTCCTAATCACTATAATGATCTTGCCAGCCTTATTTTTAACACAAACGATGATGCTATCAGAAATCTATTTAGCAGGAACACTGCAAGTGAGTTTGAGTTTTCATCAACATTCATCTTCTTCATCACATGCTTTTTCTTAAGTATCTTTAGCTGTGGAGTTGTTGTTCCTGCTGGTCTTTTTGTGCCAATTATTGTGACTGGTGCATCTTATGGACGCATTGTTGGAATGTTAGTTGGTAAAAATTCCAATCTTAACCATGGCCTATATGCTGTACTTGGCGCTGCTTCCTTTCTTGGTGGATCTATGAGGTCAACAGTTTCTCTGTGTGTAATTATGCTAGAACTGACCAATAACCTGTTATTGCTACCCCTAATCATGATGGTGCTGTTGGTATCCAAGACTGTAGCTGATGTTTTCAATGCAAATATATATGACCTTATAATGAAAGCCAAGGGTTTCCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTAACAGTAGCTGATGTAGTCACAGGCCCACTTCAGATGTTTAATGCCATTGAGAAGGTTCGTAACATAGTGTTTGTCCTCAAAACTACAAGACATAATGGGTTTCCTGTTATTGATGAGCCTCCACTTTCTGAAGCTCCAGTTTTATTTGGTATAATCCTTCGTGCCCATCTTATTGCATTGTTAAAGAAGAGAGCTTTCTTGTCTGTGCCTATGACAATGAGGGATCATGTCTTGAAACAGTTTTCAGCAGATGATTTTGCAAAGAACGGTTCAAGCAAAGGTGAAGATATTGAGGATATACAGTTAACGGAAGAAGAGATGGACATGTTCATTGATCTACATCCTTTTACTAATGCTTCGCCTTATACTGTCGTGGAAACAATGTCACTGGGGAAGGCCCTTACACTCTTCCGAGAGGTTGGTTTAAGGCACATGCTAGTGATACCCAAGATACCCAGTGGTGCTAAATTTAGTTGA 2205 0.4177 MSTNHLSNGDSESLLRRPLLSSQRSIVNSTSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGLVQIFQYIFMKWLLCFLIGMILGLVGFCNNLAVENLAGMKFVITSNMMLEGRFLLAFVTFFASNLCLTLFASIITALIAPTAAGSGIPEVKAYLNGVDAPGIFTVRTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRHGFTWKWLRFFKNDRDRRDIITCGSAAGMAAAFRAPVGGVLFTLEEMASWWRTALLWRAFFTAAIVAIFLRAMIDICLSGKCGLFGKGGLIMFDAYTASISYHSADIPLVFFLGVIGGILGSIYNYMLNKVLRIYNVINEKGTICKILLACLISIFTSCLLFGLPWLASCRPCPPDAVEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSRNTASEFEFSSTFIFFITCFFLSIFSCGVVVPAGLFVPIIVTGASYGRIVGMLVGKNSNLNHGLYAVLGAASFLGGSMRSTVSLCVIMLELTNNLLLLPLIMMVLLVSKTVADVFNANIYDLIMKAKGFPYLETHAEPYMRQLTVADVVTGPLQMFNAIEKVRNIVFVLKTTRHNGFPVIDEPPLSEAPVLFGIILRAHLIALLKKRAFLSVPMTMRDHVLKQFSADDFAKNGSSKGEDIEDIQLTEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFREVGLRHMLVIPKIPSGAKFS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi826g00005 734 PRINTS Chloride channel signature 496 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi826g00005 734 PRINTS Chloride channel signature 552 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi826g00005 734 PRINTS Chloride channel signature 514 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi826g00005 734 PRINTS Chloride channel signature 464 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi826g00005 734 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi826g00005 734 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi826g00005 734 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi826g00005 734 FunFam Chloride channel ClC3 67 384 - -
Sebi826g00005 734 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sebi826g00005 734 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sebi826g00005 734 PRINTS Plant CLC chloride channel signature 416 432 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sebi826g00005 734 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sebi826g00005 734 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sebi826g00005 734 SUPERFAMILY Clc chloride channel 53 567 IPR014743 -
Sebi826g00005 734 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 23 726 - -
Sebi826g00005 734 Gene3D Clc chloride channel 67 566 - -
Sebi826g00005 734 Gene3D - 567 726 IPR046342 -
Sebi826g00005 734 CDD CBS_pair_voltage-gated_CLC_euk_bac 577 726 - -
Sebi826g00005 734 Pfam Voltage gated chloride channel 132 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi826g00005 734 SUPERFAMILY CBS-domain pair 568 725 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi826g00005 Sebi-Chr826 70922 74962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi826g00005 6 726 Ion Channels AT5G33280 73.925 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi826g00005 K05016 - gmx:100817901 1189.87