Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi825g00013 ATGGGTTGCATTTACTCCAGGGTTTGCATAGGTGACACTTGCAGAGGTTCCAGTGTCAATGGGGACCCAATTTTGAGACCAGGTGTGGGTGAAGTCGCTGCTACGTTCTCACCAACATCTTCAGAGGTTCGAGAAGGTGAAATCAGAGACAATTTGAACCAATTGAGCTTAACCAGAGAGTCTGAAGCTGGAATCAGAAGGCTCGCTAGGGTTTCTGCTCAGTTTCTTCCCCCAGATGGTTCCAGAGTTGTCAAGGTTCCTTCAAACAACTATGATTTGCGCTATTCGTTTTTGTCTCAGAGAGGTTACTACCCTGATGCACTTGATAAGGCTAACCAAGACAGCTTCTGCATTCACACTCCCTTTGGAACTAGTCCTAACGATCATTTCTTCGGGGTTTTTGATGGTCATGGTGAATTTGGAGCGCAGTGTTCGCAGTTCGTGAAGCAGAAGCTGTGTGAGAATTTGCTGAGGAACTCCAAGTTTCGTGTGGATGCTGTGGAGGCTTGTCATGCTGCGTTCTTGACCACGAATTCGCAGTTGCATGCTGATATTTTGGATGATAGCATGAGTGGAACTACGGCCATCACAGTGCTGGTTCGGGGAAGAACTATGTATGTGGCGAATTGTGGTGATTCGAGGGCGGTTATAGCAGAGAAGAGAGGGAAGGATGTTGTGGCGGTTGATTTGTCAATTGATCAGACACCTTTTAGGACTGATGAGCTTGAAAGGGTGAAGCTTTGTGGAGCAAGGGTTCTTACCTTGGATCAGATTGAAGGGTTGAAGAACCCTGATGTTCAGTGTTGGGGCACTGAAGAAGGTGATGATGGTGACCCTCCTAGGTTGTGGGTGCCCAATGGGATGTACCCTGGTACTGCTTTTACCAGGAGTTTAGGTGATTCTGTTGCTGAGAGTATTGGGGTTGTTGCTAACCCTGAGATTGTTGTGTTCGAGCTCACGGAGGATAATCCCTTTTTTGTGCTTGCCAGTGATGGGGTGTTTGAGTTTCTTTCTAGCCAGACTGTGGTTGAAATGGTTGCAAAATTCAAAGATCCTCGTGATGCTTGTGCTGCAATAGTGGCAGAATCTTATCGACTTTGGCTACAGTATGAAACTCGTACAGATGATATTACAGTCATAATTGTGCATATAAATGGCCTAACTGAACCTGCTGTTGGTCAGTCAGCAAGTTATGGTGATGTTTTACGAGCCCCTGTACCTCAAGTTGTAGAGGTGACTGGTTCAGAATCTCCTTCCACCTTTGGCTGGAATGCTAGGAACCATCGTGTAAGGCATGACTTGTCAAGGGCACGCCTCCGAGCAATTGAAAATTCCCTAGAGAATGGACAAGCTTGGGTTCCTCCATCTTCAGCCCACAGGAAGACATGGGAGGAAGAAGCACACATCGAGCAGGCGTTGCATGATCATTTTCTCTTCCGAAAACTTACTGATTCACAATGTCATGTTTTATTGGATTGCATGCAAAGAGTTGAAGTCGAACCTGGGGATATTATAGTCAAACAGGGTGGTGAAGGTGACTGTTTCTATGTTGTTGGTAGTGGAGAATTTGAAGTCTTGGCAACTCAGGAGGAAAAGGATGGGGAGGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTATCATGTTTTGGAGAACTTGCTTTAATGTTTGTTATCCAGTCTCCAGATAAGCTTACAAAGTTCAACTATAATTGCAGCATTCCAGAATATGGGCAATGTATAATAACCACTCCAGGCTTCTACCTCCTCTCAAGGCTGTCAATTTTGCAATTGAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCGTTCTCAAGTGGGCAGACAATAATTGAAAAGAATGAAGTCCATGCATTGTATATTATCCAGAAGGGACGAGTTAAAATCGCTTTTGATGCTGATTTATTGACAAGTGCAAATGCCTCCAGCCTCAGGCCTGACATCCAAAATGAGGATGATGATGTACAGAGCAGAAGAGAACTGTCAATAGAGAAGCCGGAGGGAAGCTATTTTGGTGAATGGGCCCTTCTTGGCGAAAATATTGGTTCCTTAACTGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTACTAACCAAGGACAAATTTGAATCAGTTATTGGCTCCTTGCAAAAGATTTCTCAGGAAGATCACAAGTTAAGGGATAATTCCAAGGAGTTGACTAGAAATCATGAATTTTCATCCCTCGATAAAGTCCAGCTCTCAGATTTGGAGTGGAGAAAGACCCTATATTCCACTGATTGCTCTGAGATTGGGCTTGCAAATTTAAGAGATTCAGAAAATTTGCTTACTTTGAAGAGATTTTCTAAGCCAATGGTGAAAAGGCTAGGAAAGGAATCACAAGTCTTGAAAGAGAAAGATTTGATCAAGGGTATGAGCTCTTCAGCTTGTATACCACAGGTTTTATGCACTTCTGCTGACCGCATATATGCTGGAATACTGCTAAATACATGCCTTGCTTGCCCTTTGTCTTCCATACTCTCAAGTCCTTTTAGCGAATCAGCAGCGCAGTTTTGTGCTGCTTCTGTTGTTTCAGCCTTAGAAGACTTGCACAAGAATGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTAGAGCAAACAGGACAAATACAGCTGGTGGACTTCAGATTTGGAAAGAAGCTCTCTGGTGAGAGAACATTCACAATTTGTGGAATGGCAGATTCGCTAGCTCCAGAGATTGTTTTGGGAAAAGGCCATGGTTTCCCTGCCGACTGGTGGGCATTGGGAGTTTTAATATATTTCATGTTACGGGGTGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGACTCAGTTGCCAAAATTGCAAAAAGGAAGCTAAATCTTCCAGAGACTTTTAGCCCTGAAGCTATTGATCTCATCTCCAAGTTACTTGAAGTGGAGGAAAACACTAGACTTGGTAGCCAAGGTCCTGATTCTGTCAAGAGTCATCCATGGTTTAATGGTATTGAATGGGAAGGGATTAGACACCGTACTTGCCCTGTTCCTCCAGAAATTACTTCTCGTATAACACAGTACTTGGAAGTACATTCTGAGGACTGTACTGGATCTCTAGGGTCCCCATTACAAGAGGTAGAAGAACTTAACATGCCTGAATGGCTTGAGGACTGGTAG 3186 0.4401 MGCIYSRVCIGDTCRGSSVNGDPILRPGVGEVAATFSPTSSEVREGEIRDNLNQLSLTRESEAGIRRLARVSAQFLPPDGSRVVKVPSNNYDLRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSPNDHFFGVFDGHGEFGAQCSQFVKQKLCENLLRNSKFRVDAVEACHAAFLTTNSQLHADILDDSMSGTTAITVLVRGRTMYVANCGDSRAVIAEKRGKDVVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSLGDSVAESIGVVANPEIVVFELTEDNPFFVLASDGVFEFLSSQTVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLTEPAVGQSASYGDVLRAPVPQVVEVTGSESPSTFGWNARNHRVRHDLSRARLRAIENSLENGQAWVPPSSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVEPGDIIVKQGGEGDCFYVVGSGEFEVLATQEEKDGEVPRVLQRYTAEKLSCFGELALMFVIQSPDKLTKFNYNCSIPEYGQCIITTPGFYLLSRLSILQLSQISDSLSEVSFSSGQTIIEKNEVHALYIIQKGRVKIAFDADLLTSANASSLRPDIQNEDDDVQSRRELSIEKPEGSYFGEWALLGENIGSLTAVAVGDVVCALLTKDKFESVIGSLQKISQEDHKLRDNSKELTRNHEFSSLDKVQLSDLEWRKTLYSTDCSEIGLANLRDSENLLTLKRFSKPMVKRLGKESQVLKEKDLIKGMSSSACIPQVLCTSADRIYAGILLNTCLACPLSSILSSPFSESAAQFCAASVVSALEDLHKNGVLYRGVSPDVLMLEQTGQIQLVDFRFGKKLSGERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDSVAKIAKRKLNLPETFSPEAIDLISKLLEVEENTRLGSQGPDSVKSHPWFNGIEWEGIRHRTCPVPPEITSRITQYLEVHSEDCTGSLGSPLQEVEELNMPEWLEDW 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi825g00013 1061 Pfam Protein kinase domain 769 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi825g00013 1061 CDD CAP_ED 590 714 IPR000595 -
Sebi825g00013 1061 CDD PP2Cc 110 384 IPR001932 -
Sebi825g00013 1061 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 89 386 - -
Sebi825g00013 1061 Coils Coil 716 736 - -
Sebi825g00013 1061 ProSiteProfiles Protein kinase domain profile. 750 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi825g00013 1061 SMART serkin_6 758 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi825g00013 1061 Gene3D Jelly Rolls 446 583 IPR014710 -
Sebi825g00013 1061 Gene3D - 83 385 IPR036457 -
Sebi825g00013 1061 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 452 565 - -
Sebi825g00013 1061 ProSiteProfiles PPM-type phosphatase domain profile. 94 384 IPR001932 -
Sebi825g00013 1061 Pfam Cyclic nucleotide-binding domain 609 713 IPR000595 -
Sebi825g00013 1061 Pfam Cyclic nucleotide-binding domain 497 557 IPR000595 -
Sebi825g00013 1061 Pfam Protein phosphatase 2C 124 363 IPR001932 -
Sebi825g00013 1061 CDD CAP_ED 478 563 IPR000595 -
Sebi825g00013 1061 SUPERFAMILY cAMP-binding domain-like 459 557 IPR018490 -
Sebi825g00013 1061 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Sebi825g00013 1061 ProSiteProfiles cAMP/cGMP binding motif profile. 590 714 IPR000595 -
Sebi825g00013 1061 SMART PP2C_4 86 382 IPR001932 -
Sebi825g00013 1061 SUPERFAMILY cAMP-binding domain-like 587 717 IPR018490 -
Sebi825g00013 1061 Gene3D Transferase(Phosphotransferase) domain 1 835 1022 - -
Sebi825g00013 1061 Gene3D Jelly Rolls 586 731 IPR014710 -
Sebi825g00013 1061 SMART cnmp_10 478 589 IPR000595 -
Sebi825g00013 1061 SMART cnmp_10 590 728 IPR000595 -
Sebi825g00013 1061 PRINTS cAMP-dependent protein kinase signature 676 685 - -
Sebi825g00013 1061 PRINTS cAMP-dependent protein kinase signature 709 721 - -
Sebi825g00013 1061 PRINTS cAMP-dependent protein kinase signature 514 528 - -
Sebi825g00013 1061 PRINTS cAMP-dependent protein kinase signature 499 513 - -
Sebi825g00013 1061 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 588 1025 - -
Sebi825g00013 1061 Gene3D Phosphorylase Kinase; domain 1 748 1024 - -
Sebi825g00013 1061 ProSiteProfiles cAMP/cGMP binding motif profile. 478 563 IPR000595 -
Sebi825g00013 1061 SUPERFAMILY PP2C-like 82 386 IPR036457 -
Sebi825g00013 1061 SUPERFAMILY Protein kinase-like (PK-like) 739 1033 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi825g00013 Sebi-Chr825 307895 315968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi825g00013 1 1061 PP2C-type Phosphatase Gene Family AT2G20050 65.602 0.0 1414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Sebi825g00013 Pkinase 2.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi825g00013 - - gmx:100799821 1850.87