Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi825g00004 ATGGTACCCAAAACAGGGGAATTAAGTCTTGAAGTTTCAACAAACGACCCAGTGAGCAACGACATTGTTGCCCAAAATCCTGAAAGGGTTGAAACAACGGTGCAGAGAAGAACTAGCTTAAGGCTTCAAAACCGGCCTAAGGCTCACTATGGCAGTGATACTAATACGAAGAGGCCAATGAATGACGCTAATGGGGACCATTCCGATGAGAAGAGAACAAAATTCAAACCTTCCATGCAACAAGAGGCATTGGCTAAGGGTGAGAATTGTATCAGAGACACATGGTCTCAGACATGGGGCTGTGGAGGGACGTGTTTGGTGAGCAGAGGTAATGGTCATTCCAGTTCAACACTTGTTTTTGATGAACTGGACTTCAGAGGTGTTTTAGCAGTGAAAGAATCGTTGAGGCTTGCCAATCTCTCGGAACTTCAATCTTCTGAGGATAAACAGAATAGTAGCAAGAAGATAGCTAAAGATTATCAAGAAGTATCCAAACTTTTAAATGCTAATAAGGTCGATAAAAATTGGGTTGTTGAGAAGCACATTCCTGGATTTACAGTATGCGAGTATCTTGTAAAGAAGCTGAAAAGTTTGGCGATGTCGAGTGTAGAGAAGGTTGTCTGTTTTTGTGAAGGGAGTATATCTGCAGCTCCGTATATTTCTCCAAGTTTGGTTGTCAAAGACATAAGCAATGGCCAGGAAGCTATATGTGTTCCTGCTACCAATGAGTATGACAATCCTCCAGTTGCACCTCCTGGTTTTACGTATATCACCTCTGTCAAAGTTGCAAGTGACGTGAAAGTACCACATAGACCCAATGGATGCAAATGCCAAGGAACTTGTAGAAATACAAGGAATTGCTCTTGTGCCAAACATAATGGCTCCGAGTTTCCCTATGTTCGTGGTGGTGACAGATTGAAGGAAGCTAGGGATGTTTTGTTTGAATGTGGACCAAAATGTGGATGTGGACCTGATTGTGGTAACAGAATTTCTCAAAAGGGTTTGAAGTACAGGCTTGAGGTTTACCGTACTGCCAACAAAGGGTGGGCTGTTAGAACATGGGACTTTATTCCTTCTGGTGCACCAGTTTTGGAATATACTGGTGTACTTCGCAGAATTGATGAGTTAGATAAATTAACCGAGAATGAATATATATTTGAAATTGATTGTTTGCAAACAATGAATGAAGTAGAGGGACGGGAGAGGCGGTTGCGTAGTGTATCACTACCTACAAAAACTTCAGCTGATGAGCCAATGAAAAACAGTCCTGAGTTCGGCATAGATGCTGAATCTTTTGGTAATGTTAGTAGGTTCATCAACCACAGTTGTGAGCCAAACCTCTTTGTGCAGTGTGTTCTGAGCTCCCACCATGATATCAGTTTAGCTCGGGTGGTGTTATTTGCTGCAGATGACATACCTCCTTACCAAGAACTGACATATGACTATGGATACATACTTGATAGTGTTGTTGGTCCGGATGGAAAAATCAAGAAGTTACCATGTCACTGTGGTACAGATGACTGCCGTAAACGCTTATACTAG 1542 0.4215 MVPKTGELSLEVSTNDPVSNDIVAQNPERVETTVQRRTSLRLQNRPKAHYGSDTNTKRPMNDANGDHSDEKRTKFKPSMQQEALAKGENCIRDTWSQTWGCGGTCLVSRGNGHSSSTLVFDELDFRGVLAVKESLRLANLSELQSSEDKQNSSKKIAKDYQEVSKLLNANKVDKNWVVEKHIPGFTVCEYLVKKLKSLAMSSVEKVVCFCEGSISAAPYISPSLVVKDISNGQEAICVPATNEYDNPPVAPPGFTYITSVKVASDVKVPHRPNGCKCQGTCRNTRNCSCAKHNGSEFPYVRGGDRLKEARDVLFECGPKCGCGPDCGNRISQKGLKYRLEVYRTANKGWAVRTWDFIPSGAPVLEYTGVLRRIDELDKLTENEYIFEIDCLQTMNEVEGRERRLRSVSLPTKTSADEPMKNSPEFGIDAESFGNVSRFINHSCEPNLFVQCVLSSHHDISLARVVLFAADDIPPYQELTYDYGYILDSVVGPDGKIKKLPCHCGTDDCRKRLY 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi825g00004 513 SUPERFAMILY SET domain 218 484 IPR046341 -
Sebi825g00004 513 MobiDBLite consensus disorder prediction 8 41 - -
Sebi825g00004 513 Pfam SET domain 348 483 IPR001214 GO:0005515
Sebi825g00004 513 SMART preset_2 226 321 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi825g00004 513 Pfam Pre-SET motif 229 329 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi825g00004 513 ProSiteProfiles SET domain profile. 337 483 IPR001214 GO:0005515
Sebi825g00004 513 ProSiteProfiles Post-SET domain profile. 497 513 IPR003616 -
Sebi825g00004 513 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 147 506 - -
Sebi825g00004 513 MobiDBLite consensus disorder prediction 60 77 - -
Sebi825g00004 513 MobiDBLite consensus disorder prediction 1 80 - -
Sebi825g00004 513 ProSiteProfiles Pre-SET domain profile. 273 334 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi825g00004 513 Gene3D SET domain 219 513 IPR046341 -
Sebi825g00004 513 SMART set_7 337 489 IPR001214 GO:0005515
Sebi825g00004 513 SMART PostSET_3 497 513 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi825g00004 Sebi-Chr825 86411 92884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi825g00004 121 513 EF-hand Containing Proteins AT5G13960 52.000 9.52e-135 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi825g00004 SET 2.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi825g00004 K11420 - lja:Lj0g3v0265609.1 533.872