LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi823g00028	ATGCAGGAGCCCCTTCTGAGCCTTTTCTCCAGGAAAGGAGAATCACATTCACTATCACCCAAGGAACAATCTGCCCATGATCTTGCTCTTGCCCCATCACTGCCTCAATCAAGTTCACCTCATATCATCAATGAAGCCAAGACCAAGAGTCCTCCTTATATTAACCTCATAGCCAACTTGAGCTTCAGGAAAGGGAACATTACTCATCGCTCCCGCTCTGCTCCATCCATATTATTCACTGACACAAGGGTAGATTTTCATGAGCCCTCTGAATCCAAACCTGCAAACAAGTCATCAACTTTAATAGTTAGGATATCTTTCATTGGTGTTTTCTTGTATGTGGCAACTGGGGTTGTAGTGTACTTAACAAGTGGGAGTTTCAAGGGCACTACTACATTCAGGCCTGTAGATGCTGTTTACTTTACAGTGGTAACTCTCTGCACTATTGGATATGGTGATATTGTTCCTGACTCCATATTTACCAAGATGTTTACATGTGGTTTCATTTTGGTGGGTTTTGGATTTATTGGTTTTCTGCTTAATGAGTTGGTTGCATATATTTGTGATACACATGAGGCATTCTTATTGAGCATGATGGATGAGAATCGATATAAGAAAATTCTCAGGACATATATGGTTGACGTTGAGAAAGGAAGAATGAGGATAAGAACTAAAGTTTGTCTATCTTTGGCTGTTGTCATTGGCTGCATTGCTATAGGAACAGTTGCTGCACGCTTTCTAGAGGATCTAAATTGGGCTGACAGCTTTTATCTCTCCATTACTTCTGTTACAACAGTTGGTTATGGGGATTATGCTTTCAGAACTGTAACTGGAAGATGTTTTGCAAGTCTATGGCTTTTGGTAAGCACACTGGCAGTTGCCAGGGCCTTTCTATACCTCACTGATTATAGCATTAACAAGAGAAGTCGTGAGATGGCAAAGTGGGTTCTTCAGAAGAAGATAACCTTATCAGATTTAGCAGCTGCAGACCTTGATAATGATGGATCAATCAGTAAGTCTGAATTTGTGATATACAAGCTTAAGCAAATGGGGAAGATTACTGAGATAGACATTCTGCAAATAAGCAAACAATTTGATTCCTTGAACCATGGAATGTATGGCAAGATCACTCTAGCTGACCTCATGGAAAAGGTCTAA	1158	0.4041	MQEPLLSLFSRKGESHSLSPKEQSAHDLALAPSLPQSSSPHIINEAKTKSPPYINLIANLSFRKGNITHRSRSAPSILFTDTRVDFHEPSESKPANKSSTLIVRISFIGVFLYVATGVVVYLTSGSFKGTTTFRPVDAVYFTVVTLCTIGYGDIVPDSIFTKMFTCGFILVGFGFIGFLLNELVAYICDTHEAFLLSMMDENRYKKILRTYMVDVEKGRMRIRTKVCLSLAVVIGCIAIGTVAARFLEDLNWADSFYLSITSVTTVGYGDYAFRTVTGRCFASLWLLVSTLAVARAFLYLTDYSINKRSREMAKWVLQKKITLSDLAAADLDNDGSISKSEFVIYKLKQMGKITEIDILQISKQFDSLNHGMYGKITLADLMEKV	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi823g00028	385	FunFam	Two-pore potassium channel 3	209	323	-	-
	Sebi823g00028	385	SUPERFAMILY	Voltage-gated potassium channels	199	320	-	-
	Sebi823g00028	385	ProSitePatterns	EF-hand calcium-binding domain.	330	342	IPR018247	-
	Sebi823g00028	385	Gene3D	-	90	190	-	-
	Sebi823g00028	385	Pfam	Ion channel	110	186	IPR013099	-
	Sebi823g00028	385	Pfam	Ion channel	232	302	IPR013099	-
	Sebi823g00028	385	MobiDBLite	consensus disorder prediction	1	27	-	-
	Sebi823g00028	385	Gene3D	-	192	329	-	-
	Sebi823g00028	385	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	136	359	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Sebi823g00028	385	PRINTS	Two pore domain K+ channel signature	144	172	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Sebi823g00028	385	PRINTS	Two pore domain K+ channel signature	264	273	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Sebi823g00028	385	SUPERFAMILY	Voltage-gated potassium channels	98	187	-	-
	Sebi823g00028	385	FunFam	Two-pore potassium channel 2-like	101	197	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi823g00028	Sebi-Chr823	395895	398039	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi823g00028	64	383	Ion Channels	AT4G18160	50.467	1.69e-110	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi823g00028	K05389		-	gmx:100789639	565.844