Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi823g00010 ATGGAGGATAAGTTTGAGATGAATGAATTAGGATCAAGAGAAGTTTCTCAGATGAAGAAAGGTGCAGGAGGAAGAGGGAAAATAGAAATAAAGAGGATTGAGAACACAACGAATAGGCAAGTTACTTTCTGCAAACGCCGTAACGGTTTGCTGAAGAAAGCGTATGAATTATCTGTTCTGTGTGATGCTGAAGTTGCTCTTGTTATCTTCTCAACCCGTGGCCGCCTCTATGAGTATGCCAACAACAGATGA 252 0.4127 MEDKFEMNELGSREVSQMKKGAGGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNR 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi823g00010 83 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Sebi823g00010 83 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 79 IPR002100 GO:0003677|GO:0046983
Sebi823g00010 83 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Sebi823g00010 83 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Sebi823g00010 83 PRINTS MADS domain signature 60 81 IPR002100 GO:0003677|GO:0046983
Sebi823g00010 83 FunFam MADS-box transcription factor 21 35 83 - -
Sebi823g00010 83 SUPERFAMILY SRF-like 24 82 IPR036879 GO:0003677|GO:0046983
Sebi823g00010 83 ProSiteProfiles MADS-box domain profile. 23 83 IPR002100 GO:0003677|GO:0046983
Sebi823g00010 83 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 82 - -
Sebi823g00010 83 Gene3D - 35 83 IPR036879 GO:0003677|GO:0046983
Sebi823g00010 83 ProSitePatterns MADS-box domain signature. 25 79 IPR002100 GO:0003677|GO:0046983
Sebi823g00010 83 CDD MADS_MEF2_like 24 82 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi823g00010 Sebi-Chr823 101047 101389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi823g00010 11 82 MADS-box Gene Family AT2G42830 87.500 3.05e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi823g00010 SRF-TF 5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi823g00010 K09264 - aew:130754170 123.25