Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi823g00005 ATGGAAAACAGCAAGCTTCAGCCTCGTTTCTCGCTGGGAAGGCAATCCTCTCTGGCGCCGGAGCGCAGCAACGATGCCGGCGCCGGCGAGGGTTCTGTTTCGGGGGCGTTGGATCCATCTGTTCGATTGATGTATTTGGCGAACGAAGGGGACTTGGAAGGGATTAAGGAGTTGTTGGACGGAGGTAGTGACGTCAATTTCAGGGACATTGATGGCCGCACCGCTCTCCACGTCGCCGCCTGTCACCGCCGCACCGATGTTGTTGACTTGTTGCTTCAAAGAGGTGCTGAGGTCGACCCTCGAGATCGCTGGGGCAGCACACCTCTTGCAGATGCATTGTACTACAAAAATCATGATGTTGTCAAACTTTTGGAGAAACATGGTGCTAAACCCCCGATGGCTCCTATGCATGTCCAAAATGCTCGTGAAGTCCCAGAATATGAGATTGATCCTTCTGAACTTGATTTTACAAATAGTGTTTGCATAACGAAGGGAACTTTCCGGATTGCATTATGGCGTGGAATTCAAGTTGCTGTCAAAACACTTGGGGAGGAAGTGTTCAGTGATGATGATAAAGTAAGGGCATTTCATGATGAGCTTACACTACTTCAAAAAATAAGACATCCAAATGTAGTCCAGTTTTTGGGTGCCGTAACACAAAGCACCCCAATGATGATTGTCACAGAGTTTCTACCCCAGGGGGATCTCCGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAATAATGGCTGTGAAGTTTGCACTTGATATTGCTAGGGGAATGAACTATTTGCATGAACATAAACCAGAAGCCATTATTCACCGAGATCTGGAGCCTTCAAATATACTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTCAAAGTTACTAAAACAGTCAAAGAAGACAAACCTGTGACATGCCAGGATACATCATGGCGTTATGTTGCTCCAGAGGTCTATAGAAATGAGGAATATGATACCAAAGTGGATGTGTTTTCATTTGCTCTGATATTACAGGAGATGATTGAAGGCTGTCCACCGTTTTATACAAAGCCAGAAAATGAAGTTCCTAAAGCATATGTTGAAAATGAGCGTCCACCATTTAGAGCTCCACAAAAGCTTTATGCTTATGGATTGAAACAGTTAATTGAGGAATGTTGGGATGGAAAACCGTACAGAAGACCAACATTTAGGCAAATAATTGGGAGATTGGATGACATCAGCTACCATCTTGCTCAAAAAAGGCACTGGAAGAATGTAGCGGATCTTAAGCTTTAA 1305 0.449 MENSKLQPRFSLGRQSSLAPERSNDAGAGEGSVSGALDPSVRLMYLANEGDLEGIKELLDGGSDVNFRDIDGRTALHVAACHRRTDVVDLLLQRGAEVDPRDRWGSTPLADALYYKNHDVVKLLEKHGAKPPMAPMHVQNAREVPEYEIDPSELDFTNSVCITKGTFRIALWRGIQVAVKTLGEEVFSDDDKVRAFHDELTLLQKIRHPNVVQFLGAVTQSTPMMIVTEFLPQGDLRAYLKRKGALKPIMAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVTKTVKEDKPVTCQDTSWRYVAPEVYRNEEYDTKVDVFSFALILQEMIEGCPPFYTKPENEVPKAYVENERPPFRAPQKLYAYGLKQLIEECWDGKPYRRPTFRQIIGRLDDISYHLAQKRHWKNVADLKL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi823g00005 434 FunFam Integrin-linked protein kinase family 18 147 - -
Sebi823g00005 434 ProSiteProfiles Protein kinase domain profile. 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi823g00005 434 SMART ANK_2a 38 67 IPR002110 GO:0005515
Sebi823g00005 434 SMART ANK_2a 71 100 IPR002110 GO:0005515
Sebi823g00005 434 SMART ANK_2a 104 133 IPR002110 GO:0005515
Sebi823g00005 434 SUPERFAMILY Protein kinase-like (PK-like) 161 413 IPR011009 -
Sebi823g00005 434 PIRSF ILK 2 433 - -
Sebi823g00005 434 MobiDBLite consensus disorder prediction 1 33 - -
Sebi823g00005 434 FunFam Os01g0748600 protein 142 432 - -
Sebi823g00005 434 SUPERFAMILY Ankyrin repeat 42 134 IPR036770 -
Sebi823g00005 434 Pfam Protein tyrosine and serine/threonine kinase 173 412 IPR001245 GO:0004672|GO:0006468
Sebi823g00005 434 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515
Sebi823g00005 434 PRINTS Tyrosine kinase catalytic domain signature 228 241 IPR001245 GO:0004672|GO:0006468
Sebi823g00005 434 PRINTS Tyrosine kinase catalytic domain signature 338 360 IPR001245 GO:0004672|GO:0006468
Sebi823g00005 434 PRINTS Tyrosine kinase catalytic domain signature 384 406 IPR001245 GO:0004672|GO:0006468
Sebi823g00005 434 PRINTS Tyrosine kinase catalytic domain signature 267 285 IPR001245 GO:0004672|GO:0006468
Sebi823g00005 434 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 86 416 - -
Sebi823g00005 434 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Sebi823g00005 434 MobiDBLite consensus disorder prediction 1 22 - -
Sebi823g00005 434 Gene3D - 34 143 IPR036770 -
Sebi823g00005 434 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Sebi823g00005 434 Gene3D Transferase(Phosphotransferase) domain 1 155 421 - -
Sebi823g00005 434 CDD STKc_MAP3K-like 170 413 - -
Sebi823g00005 434 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi823g00005 Sebi-Chr823 38229 44114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi823g00005 1 434 MAP Kinase Kinase Kinase AT4G18950 67.580 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Sebi823g00005 PK_Tyr_Ser-Thr 3.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi823g00005 - - gmx:100795964 765.377