Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi822g00018 ATGGCTCCTGCCACCTCCTCCCCCGGCGTCTCACAGCTCGTTGCTTCAGTCGTCGCACGCATGCGCCGCGCCATCCACAACGGCCGGGCGGAGGAGCTGCTTTTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATGTGTGAGGCCCATCGTCGTGAGGGTACCGAAAGGATCATGGCTTTGCCCTAAGTGTTCAGGAGGGAAGAGAGTGAGAGGTTTCCCTCAGAAGAAGAAAACTGATTTCTTTGGGATTGACAAGGATTCTTCTGACTTTAAGAACAAAGGTTCTTCTTCTCAGGGTAATGTCCTGAAATTTAGACATATTTATATATAA 336 0.5 MAPATSSPGVSQLVASVVARMRRAIHNGRAEELLLCDKCDKGFHMKCVRPIVVRVPKGSWLCPKCSGGKRVRGFPQKKKTDFFGIDKDSSDFKNKGSSSQGNVLKFRHIYI 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi822g00018 111 SUPERFAMILY FYVE/PHD zinc finger 29 71 IPR011011 -
Sebi822g00018 111 Pfam PHD-finger 28 66 IPR019787 -
Sebi822g00018 111 SMART PHD_3 28 66 IPR001965 -
Sebi822g00018 111 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 27 82 IPR047171 GO:0006338
Sebi822g00018 111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 67 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi822g00018 Sebi-Chr822 328621 329185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi822g00018 31 75 C2H2 Transcription Factor Family AT3G01460 41.304 2.01e-08 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi822g00018 PHD 3.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi822g00018 K24406 - gmx:100808815 114.39