Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi820g00023 ATGGCCAACTCAACTGATTCCTCTGGATTCCTTGGCTCTGTCAGCATCAGTGGCTATGGCTATGGCATAGGGATTCCATTTGTAATACTCTTACTTGTCATAACCCTCACTCTTACTGCCTATTTCTGCACACGGAGACCTCTTCCACCTGCTCAGCTTCGGAGGAGACCTATCCTTAATGTCATTGAACCACAACATGTAGTCATAGGTATAGATGAAGCCACAATTAAGAGTTATCCAACTTTGCTTTACTCTGAAGCCAGGCTCAAGAAGTTTGATTCCTCTGCAGCAACATGTTGCTCCATATGTCTGGCAGATTACAAAAGTACTGATATGATTCGGGCACTACCTGATTGTGGTCATCAGTTCCACCTCAACTGTATAGATCCATGGTTGAGACTTCATCCTACATGTCCAGTTTGTAGAACATCTCCATTGCCAACACCACTCTCAACTCCTCTAGCTGAGGTGGTTCCATTAGCAACGACACAGAATTCATAG 501 0.4431 MANSTDSSGFLGSVSISGYGYGIGIPFVILLLVITLTLTAYFCTRRPLPPAQLRRRPILNVIEPQHVVIGIDEATIKSYPTLLYSEARLKKFDSSAATCCSICLADYKSTDMIRALPDCGHQFHLNCIDPWLRLHPTCPVCRTSPLPTPLSTPLAEVVPLATTQNS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi820g00023 166 Pfam Ring finger domain 100 142 IPR001841 -
Sebi820g00023 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 146 IPR013083 -
Sebi820g00023 166 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Sebi820g00023 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 156 IPR045899 -
Sebi820g00023 166 CDD RING-H2_EL5-like 99 142 - -
Sebi820g00023 166 SMART ring_2 100 141 IPR001841 -
Sebi820g00023 166 SUPERFAMILY RING/U-box 76 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi820g00023 Sebi-Chr820 371555 372055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi820g00023 16 161 C3H Transcription Factor Family AT5G06490 49.133 8.76e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi820g00023 - - gmx:100811799 225.713