Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi820g00019 ATGAAGGTGACTAAAAGGAAGGTATCACTAAAACTGATTGAGAATTTGAAAGTGAGAAAATGTTGTTACAAAAAAAGAACTCTAGGCTTGTTAAGGAAGATAAAGGAGCTTTCCATACTTTGTGGTATCCCTACATGCTCAGCCATCTATGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTAAAGTGGCTAAACAACTACTAAAGAGGCTTGAGGAAGTTCCAAAGGGTGTTAAGTCCAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGCCAGGCTCAAGGAGAGGAACAATGAGAAAGATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAGTGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAATTGAACAAAGTTAGAATGAGAACCAAGCATTTTAAGGAGGAGTTACCTCCTAATCCTCCACCACCACCACCGGTGTCTTGTCCTCAAGAAAATGAGGTCCTAGAGAAACAATCATCCTTAGATTTGGTGAAAGACACTAATCAGGTGAATAGTGGTTTTGATGATAATAATGTGGGTAGTAGCAGCATGGGGCTACCACCACCACCACATGCAAATCTTAGTGATGTTGATATGGTGTTTCCCCAAGAGAATTCTGGAGGTTTCAATAATGTGAGTGATTTAGGGGTGTTTCCTCCAACCAATTTTGGAGATCTCATTGGTGAAAGTGACATAGGGTCAGAGGTGTTCCCTCTTAGTGATTTTGGAGGCTCCATTGGTAAGAGTGGCTCAGGGTTAGGGGCGTTTCCTCTAGAGAATTTCAGAAATCTCAATGGTGAAAGTGATCACTTGGGGTTAGAGGTGTTGCCTCCTCAAGCAAATTTTGAAGGTCTTAATGGTGAAAATGACTTGTGGTTTTTACCTCAAGGAAATTTTGAAGGTTTCAATGGTGAAAATGACTTGTGGTTGTTACCTCAAGGCTATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGACAATTATAAAGGTCTCAATGTTGGAAGCGACTCAGGGGTGTTACCTCAAGGCACTTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTATGGAGGTCTCAATGTTGGAAGTGACTCACGGGTGTTACCTCAAGGCAATTTCAGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTATGGAAGTCTCAATGTTGGAAGTGACTTAGGGGTGTTACCTCAAGGAAATTTTGGAAGTCTCAATGGTGAAAGTGATGAAGGTAATTATGGAGGTCTCAATGTTGGAAGTGACTCAGGGGTTTTACCTCAAGGCAATTTCGGAGGTCTCAGCGGTGAAAGTGATGAAGGCAATTATGGAAGTCTCAATGTTGGATGCGACTTAGGGGTGTTACCTCAAGGAAATTTTGGAGGTCTTATTGGTGAAAGTGATGAAGGAAATTATGAAGGTCTCAATGTTGGAAGTGACTCAGGGGTTTTACCTCAAGACAATTTTGGAGGTCTCAATGGTGAAAGTGATTTAGGAATATTGCTTCAAGACAATTTTGAAGGTCTCAATGGTGAAAGGGGTGATAGTTCACAGGCGTGGCCTGAAAGCAATTTTGGAGATCTCAATGATAGAAGTGATCTCTTAGAGATGTATAATTTTAAAGGTCTCAATAGTGAAAGTGGTGATAGTTCACGGGTACTGCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTGATCTCGTAAAGATGTATATTGAAGGTAATTTTGAAGGTCTCAATGGTGAAAGTAATTCAGGGATTCTGAATGGAAGCTCTACTGATGAAATTGGAGGTAGTAACATATGGCCATCTTATGGACATTTTGAAAGTACAATGGGTGGAAGTTACATGGAAATAGGGCAACATAATGAAAATCAAGGATGGTCTATTAGCAATACTGGGCTAATTTGTGGTCATCAAAACAACTCTGGGGCCAACACTAATGAAGCTGCTATGGGGAGATTCGATGCAAACTTTGTTGGCAATTATAATGGAAATAACTTGAATTCTGGATTGCCTACTCATGGAAACTTTGCTAGTAGCGGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAATTTTTCTTGA 2184 0.4006 MKVTKRKVSLKLIENLKVRKCCYKKRTLGLLRKIKELSILCGIPTCSAIYGPGDTKPKIWPSPKVAKQLLKRLEEVPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKDMSILMHQIHHDGKSLSDFEPSDLKCLLGYVEQKLNKVRMRTKHFKEELPPNPPPPPPVSCPQENEVLEKQSSLDLVKDTNQVNSGFDDNNVGSSSMGLPPPPHANLSDVDMVFPQENSGGFNNVSDLGVFPPTNFGDLIGESDIGSEVFPLSDFGGSIGKSGSGLGAFPLENFRNLNGESDHLGLEVLPPQANFEGLNGENDLWFLPQGNFEGFNGENDLWLLPQGYFGGLNGESDEDNYKGLNVGSDSGVLPQGTFGGLNGESDEGNYGGLNVGSDSRVLPQGNFRGLNGESDEGNYGSLNVGSDLGVLPQGNFGSLNGESDEGNYGGLNVGSDSGVLPQGNFGGLSGESDEGNYGSLNVGCDLGVLPQGNFGGLIGESDEGNYEGLNVGSDSGVLPQDNFGGLNGESDLGILLQDNFEGLNGERGDSSQAWPESNFGDLNDRSDLLEMYNFKGLNSESGDSSRVLPEGNFGDLNDGSDLVKMYIEGNFEGLNGESNSGILNGSSTDEIGGSNIWPSYGHFESTMGGSYMEIGQHNENQGWSISNTGLICGHQNNSGANTNEAAMGRFDANFVGNYNGNNLNSGLPTHGNFASSGEFGSDTQVPTSFGGNFS 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi820g00019 727 MobiDBLite consensus disorder prediction 707 727 - -
Sebi820g00019 727 SUPERFAMILY SRF-like 5 97 IPR036879 GO:0003677|GO:0046983
Sebi820g00019 727 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 53 IPR002100 GO:0003677|GO:0046983
Sebi820g00019 727 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Sebi820g00019 727 ProSiteProfiles MADS-box domain profile. 3 42 IPR002100 GO:0003677|GO:0046983
Sebi820g00019 727 Coils Coil 89 116 - -
Sebi820g00019 727 Gene3D - 17 113 IPR036879 GO:0003677|GO:0046983
Sebi820g00019 727 PANTHER SERUM RESPONSE FACTOR HOMOLOG 6 183 - -
Sebi820g00019 727 CDD MADS_SRF_like 4 86 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi820g00019 Sebi-Chr820 333134 335317 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi820g00019 3 169 Type I MADS-box Gene Family AT2G40210 33.533 1.78e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi820g00019 SRF-TF 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi820g00019 - - mtr:25491525 209.149