Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi820g00015 ATGGCGATGCCAACAGTTTATCTTAAAGAACATGAAGGAATTGCACACAATTTTGTGGGGCAGTTATCATCTGCAACTTCAGCACCCTGGTGGAGTGCTGCTTTTGGATCTCAATCTGTTTATGGAGAGTCCTGTGGCCAAATGAAACCCTTTTCATTGGAGCCACCTACCTGTGTAGACCAACTTGCTGCCAGTAAGCAATCTAACAGAGGAGCTGAACAAGTGTTGGGTAAAGGACATCCAACTCAATTTACCATCTTTCCAGATGATTGTGAAGTGTCAGGTGATGCACAAAAGCCTCACACAACCATATCACTGCAGTCATCACTCACTGATAATACCCGCACTCGTTTTGAACTTGGATTTAGTCAGCCTATGGTCTGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAACTTATGGACCTCAACTTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTATGTGAATGCAAAGCAGTACCATGGAATCATTAGACGTCGCCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGATTAAACGTCGCAAG 588 0.4337 MAMPTVYLKEHEGIAHNFVGQLSSATSAPWWSAAFGSQSVYGESCGQMKPFSLEPPTCVDQLAASKQSNRGAEQVLGKGHPTQFTIFPDDCEVSGDAQKPHTTISLQSSLTDNTRTRFELGFSQPMVCAKYPYTDQFYGLFSTYGPQLSGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDHKLIKRRK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi820g00015 196 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 196 IPR001289 GO:0003700|GO:0006355
Sebi820g00015 196 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 63 196 IPR001289 GO:0003700|GO:0006355
Sebi820g00015 196 Gene3D - 161 196 - -
Sebi820g00015 196 ProSiteProfiles NF-YA/HAP2 family profile. 161 196 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi820g00015 Sebi-Chr820 238330 240800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi820g00015 22 195 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.646 2.47e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sebi820g00015 CBFB_NFYA 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi820g00015 K08064 - gmx:100815382 318.546