Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi820g00014 CCCTATATGCATGAGTCACGCCATCTCCATGCACTGCGCCGACCAAGAGGGAGTGGTGGTCGCTTCTTGAACTCAAAGAATTCTGCTAATGGGAATGGCAAAAGTGGCAGTGAAATTAAAAAAACTGGTGGTGAACAACTGCACTCCAGTGGCTCTCAGAGTTCTGAAGTTCTTCAATCTGAGGTTGGAACTTTAAACTCATCAAAAGATACTAATGGTAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGGAGCTCTTGCTCTTGATAGCTTTGCTGTCAATCATCTTGGAGCTGCTGTTCACTCTCTGGCAGACATGATAAATGGTGGGCGTGGCATCACCAAATGGGTTACAGCAGCAGATAATTGCTGTAACCTTAAAGTTTGA 405 0.4469 PYMHESRHLHALRRPRGSGGRFLNSKNSANGNGKSGSEIKKTGGEQLHSSGSQSSEVLQSEVGTLNSSKDTNGSSPNISGSEVTSMYSRGALALDSFAVNHLGAAVHSLADMINGGRGITKWVTAADNCCNLKV 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi820g00014 134 ProSiteProfiles NF-YA/HAP2 family profile. 1 25 IPR001289 GO:0003700|GO:0006355
Sebi820g00014 134 MobiDBLite consensus disorder prediction 1 82 - -
Sebi820g00014 134 MobiDBLite consensus disorder prediction 21 82 - -
Sebi820g00014 134 Gene3D - 1 27 - -
Sebi820g00014 134 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 1 22 IPR001289 GO:0003700|GO:0006355
Sebi820g00014 134 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 88 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi820g00014 Sebi-Chr820 236371 236775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi820g00014 1 133 CCAAT-HAP2 Transcription Factor Family AT3G05690 49.306 1.47e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sebi820g00014 CBFB_NFYA 6.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi820g00014 K08064 - gmx:100527677 194.126