Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi820g00010 ATGGATGAGATTGATGTTCCTTCATACTTTCTCTGCCCAATTTCATTAGAAATCATGAAAGATCCAGTTACTGTCTACACGGGGATCACCTATGACAGAGAGAGTATTGAAAAGTGGCTATTTTCTAAGAACAACAACACATGCCCTGTCACAAAACAACCACTCTCAGATTGCACTGATCTAACCCCAAACCACACCCTTCGACGACTCATTCAAGCATGGTTGTACCATGAACGCTTCTCACGGCATCGAAAGGATTCCAACTCCAAAGCCACCAATCAACAAATACCAAATTTCAAAGCTTCTCAAGACGCTTCCCATTCTCCCCTGATGCAAATCAAATGTCTCCGAAGGCTTAAATCCATCGCTTCTGGAAAGGCTAACCCAGAAGACGAAGCCTTAAGCATTCTCCATAACCTCCATCTATCTGAAACAGGGTTGAAGACTCTGCTAGGCTTCAAAAACGGAGACTTTATCAACACCTTAACAAGGGTTATGCAAAAGGGTGGAAATTCTGAAGGATCAGATTTCCTTAAAGGCATCAAAAGCGACACTACAGACCCTGATTCAACTCTGTCCTTGGGGGAGAAACAGGATCAAAGCAGTGGAAGCAGGGCTGTGAGGATTTTGCTTTCTATCTCGAAATTCTCTGCAACACCAAATGTTCTTCAAGAAATGTTGAAACTTGGTGTGGTGGCAAAACTGTGTTTGGTGCTTCAAGTGGATAGTGGAAGTAAGGCTAAGGAGAAAGCAAGAGAGATACTCAAATTGCATGGTCGGACATGGAGGGAATCTCCATGCATACCTAACAATTTGCTTTCTTCCTACCCAGCTTGTATGTGA 843 0.4318 MDEIDVPSYFLCPISLEIMKDPVTVYTGITYDRESIEKWLFSKNNNTCPVTKQPLSDCTDLTPNHTLRRLIQAWLYHERFSRHRKDSNSKATNQQIPNFKASQDASHSPLMQIKCLRRLKSIASGKANPEDEALSILHNLHLSETGLKTLLGFKNGDFINTLTRVMQKGGNSEGSDFLKGIKSDTTDPDSTLSLGEKQDQSSGSRAVRILLSISKFSATPNVLQEMLKLGVVAKLCLVLQVDSGSKAKEKAREILKLHGRTWRESPCIPNNLLSSYPACM 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi820g00010 280 PANTHER WDSAM1 PROTEIN 203 269 IPR045185 GO:0061630
Sebi820g00010 280 MobiDBLite consensus disorder prediction 171 199 - -
Sebi820g00010 280 FunFam RING-type E3 ubiquitin transferase 6 79 - -
Sebi820g00010 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 97 IPR013083 -
Sebi820g00010 280 MobiDBLite consensus disorder prediction 85 105 - -
Sebi820g00010 280 MobiDBLite consensus disorder prediction 184 199 - -
Sebi820g00010 280 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Sebi820g00010 280 MobiDBLite consensus disorder prediction 90 105 - -
Sebi820g00010 280 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Sebi820g00010 280 CDD RING-Ubox_PUB 7 57 IPR045210 -
Sebi820g00010 280 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Sebi820g00010 280 SUPERFAMILY RING/U-box 3 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi820g00010 Sebi-Chr820 173675 174901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi820g00010 200 277 U-box Gene Family AT2G35930 62.821 6.29e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi820g00010 - - aip:107624094 285.034