Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi820g00003 ATGGATGGCTCTTCTCGAACCTTCCTTTCCACTCTCCTCCTCCTGGTTACAACGGTGTTCGCCACCACTGACCCAAACGACCTGAAAATCCTCAACCAGTTCAGAAAAGGCTTGGACAACCCCGAATTGCTACCTTGGCCTGAAGAAGGGGGTGACCCATGTGGCATCCCAGGTTGGAAATACATCTTCTGCGACGGTGATAGAGTCTCACAGATTCAAACTAAGAACTTGAACCTCAGTGGCCCTTTACCTCAGAATCTGAACCAGCTAACCGAGCTCTTCAACTTGGGTCTCCAGAACAACAAGTTCAACGGTCCCTTGCCGTCGCTAAAAGGGTTGTCGAAGCTGAAATACGCGTTTTTGGACAACAATAACTTCGATTCCATCCCTCCTGATTTCTTCGAGGGGCTTGATAGCTTGGAGGTTCTGGCATTGGATAACAATGGCCTCAATGTTACCACTGGTGGGTGGCAATTTCCTTCTTCGTTGCAGGGTTCAACGCAATTAACCAACCTTTCTTGCATTAATTGCAATTTGGCGGGTCCTTTGCCGGATTTTCTGGGGAAGATGAACTCTCTGTCGTTTTTGAAGCTCTCCGGCAACGGTTTGACCGGCGAGATCCCGGTGAGTCTCAACGGGTCAGGGTCTATGCAGGTTCTGTGGTTGAATAACCAGAAGGGTGATGGTCTCACTGGGAATATTGACGTGGTGGCCACCATGACTTCACTCACGAGTTTGTGGCTTCATGGGAACAAGTTCACTGGGTCTATTCCGGAGAACATTGGGGATTTGGCTACTCTCAAGGTTCTTAACCTCAATGGCAACAACCTCGTTGGTCTAATCCCTGATGCATTAGGTAACATGGAATTGGACAACCTAAATTTGAACAATAACAGGTTCATGGGTCCGATCCCAAATTTTAAAGCATCTACAGTCTCTTATGATAACAATGATTTTTGTCAAAACAAAAGGGGGGTTCCCTGTGCCTTTGAAGTCATGGCGCTCCTGGGATTTCTTGGTGAGTTGAATTATCCTTCAAATCTAGTTGAATCCTGGACTGGTAATGACCCTTGTAAGGGGCTTTGGTTGGGAATAAAGTGCAATGCCAATGGAAAGGTGTCTTTGATTAATTTGCCACACTTTAATCTTAGTGGTACTTTAAGTCCTTCTGTTGCAAACTTAGGTTCTCTTGTTGAAATCAGATTGGGGGGTAACAAGCTTAGTGGTGTGGTACCTAGTAACTGGACTAGCTTGACGTCTTTGACATTGTTGGATCTGAGTGGCAATAACATTTCTCCTCCACTGCCTAAGTTTACTACTGGCTTGAAACCTGTGATTGATGGGAATCCTCTATTCAATGGTAACCCGGAAGCTCCTTCCTCAGGGAATAACAACCCATCAGCTGGATCTGGGAATGCTGAAAATACACCGGCACACTCGAATTCAAGTTCAACTGATTCTTTTGAATCAAAAAAGTCCAAGAGGAAAGGCGAAAAATCTGTAGTGACCCGGCTTGCTGGGACTTTTGGATACTTAGCTCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGCAGATGTTTTCAGTTTTGGAGTTGTGCTAATGGAGCTGTTGACTGGATTGATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGCATATAAAATCAGATAAGAAAAAACTAATGGCTGCTATTGACCCAGTTCTTGACATAAAGGAAGAAACGTTTGAGAGCATTTCCATCATTGCTGAGCTAGCTGGGCACTGCACTGCCAGAGAACCAAGCCAAAGGCCAGAAATGGGTCATGCTGTGAATGTTCTGGCACCCCTTGTTGAAAAATGGAAACCATTTGATGATGACACGGAGGAGTATTCTGGCATCGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGCTGGCAGGAGGCAGAAGGAAAGGACTTAAGTTATATGGACCTAGAAGACAGTAAGAGTAGTATTCCTGCAAGGCCTACTGGGTTTGCAGATTCTTTTACTTCAGCTGATGGCCGGTGA 2061 0.4556 MDGSSRTFLSTLLLLVTTVFATTDPNDLKILNQFRKGLDNPELLPWPEEGGDPCGIPGWKYIFCDGDRVSQIQTKNLNLSGPLPQNLNQLTELFNLGLQNNKFNGPLPSLKGLSKLKYAFLDNNNFDSIPPDFFEGLDSLEVLALDNNGLNVTTGGWQFPSSLQGSTQLTNLSCINCNLAGPLPDFLGKMNSLSFLKLSGNGLTGEIPVSLNGSGSMQVLWLNNQKGDGLTGNIDVVATMTSLTSLWLHGNKFTGSIPENIGDLATLKVLNLNGNNLVGLIPDALGNMELDNLNLNNNRFMGPIPNFKASTVSYDNNDFCQNKRGVPCAFEVMALLGFLGELNYPSNLVESWTGNDPCKGLWLGIKCNANGKVSLINLPHFNLSGTLSPSVANLGSLVEIRLGGNKLSGVVPSNWTSLTSLTLLDLSGNNISPPLPKFTTGLKPVIDGNPLFNGNPEAPSSGNNNPSAGSGNAENTPAHSNSSSTDSFESKKSKRKGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDPVLDIKEETFESISIIAELAGHCTAREPSQRPEMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDLSYMDLEDSKSSIPARPTGFADSFTSADGR 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi820g00003 686 MobiDBLite consensus disorder prediction 449 496 - -
Sebi820g00003 686 MobiDBLite consensus disorder prediction 454 487 - -
Sebi820g00003 686 Pfam Protein kinase domain 498 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi820g00003 686 FunFam Receptor-like kinase TMK4 25 325 - -
Sebi820g00003 686 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Sebi820g00003 686 Pfam Leucine rich repeat N-terminal domain 332 368 IPR013210 -
Sebi820g00003 686 SUPERFAMILY L domain-like 22 308 - -
Sebi820g00003 686 SMART LRR_typ_2 113 136 IPR003591 -
Sebi820g00003 686 SMART LRR_typ_2 418 442 IPR003591 -
Sebi820g00003 686 SMART LRR_typ_2 394 417 IPR003591 -
Sebi820g00003 686 SMART LRR_typ_2 264 287 IPR003591 -
Sebi820g00003 686 SMART LRR_typ_2 240 263 IPR003591 -
Sebi820g00003 686 SMART LRR_typ_2 190 214 IPR003591 -
Sebi820g00003 686 Gene3D Transferase(Phosphotransferase) domain 1 482 636 - -
Sebi820g00003 686 MobiDBLite consensus disorder prediction 664 686 - -
Sebi820g00003 686 FunFam Leucine-rich repeat receptor-like kinase 330 455 - -
Sebi820g00003 686 Pfam Leucine rich repeat 242 300 IPR001611 GO:0005515
Sebi820g00003 686 Gene3D Ribonuclease Inhibitor 330 453 IPR032675 -
Sebi820g00003 686 SUPERFAMILY Protein kinase-like (PK-like) 499 617 IPR011009 -
Sebi820g00003 686 PANTHER OSJNBA0070M12.3 PROTEIN 9 462 - -
Sebi820g00003 686 Gene3D Ribonuclease Inhibitor 25 326 IPR032675 -
Sebi820g00003 686 SUPERFAMILY L domain-like 331 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi820g00003 Sebi-Chr820 24561 27814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi820g00003 504 616 Receptor kinase-like Gene Family AT5G01890 29.825 2.04e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Sebi820g00003 Pkinase 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi820g00003 K00924 - gmx:100305366 664.07