Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi81g00152 ATGGGAGAGGTTGTGTTGCTCGTTGATGATTTGAAATCACTTTCTGGGATTTCTCGATGTAGAATATGTCATGAAGAAGAATTCGAAAGCTCCAAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGCAATGAGAAAGGAAATACAACTTGTGAAATATGTTTACAGCAATATGAACCTGGATATACAGCACCTCCAAAAAAATCTCAAATATCTGATGCGGCAATGACCATTAGAGAAAGCCTGCAAATTTCAATGCTGGAGCAAGAACCGTTAAACACAAGAATAGTGGGTATAGTTGAAGGAGTAACAATAGAAAACAATTACTCTGAATGCACGTATGCTGCAGATAGAAGCGCGTCTCTCTGTCGATCACTGGCTTTTGCTTTTACTCTCATCTTGCTTGTAAGACATCTTTTTGCTCTGCTTACAAGTGGAATGGAAGATTATCCATTTACAATTCTTACAGTCTTTATGCTAAGGGCTAGTGGAATTATTATACCCATGTACATAATTATGAGGACTATCGGAGCCATTCATAAGAGTATTAAGCGCCAGAATTATCAGGATTCTGACGATGACTCATCAATGACTGATGGAGATGATGAAGAAAATGAGACACCACACGATGCAATTTTAAGACATTCATGA 690 0.3855 MGEVVLLVDDLKSLSGISRCRICHEEEFESSKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAPPKKSQISDAAMTIRESLQISMLEQEPLNTRIVGIVEGVTIENNYSECTYAADRSASLCRSLAFAFTLILLVRHLFALLTSGMEDYPFTILTVFMLRASGIIIPMYIIMRTIGAIHKSIKRQNYQDSDDDSSMTDGDDEENETPHDAILRHS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi81g00152 229 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Sebi81g00152 229 SUPERFAMILY RING/U-box 19 72 - -
Sebi81g00152 229 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Sebi81g00152 229 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 199 IPR033275 -
Sebi81g00152 229 CDD RING_CH-C4HC3_MARCH 20 67 - -
Sebi81g00152 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 77 IPR013083 -
Sebi81g00152 229 Pfam Protein of unknown function (DUF3675) 73 189 IPR022143 -
Sebi81g00152 229 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Sebi81g00152 229 SMART ringv_2 19 68 IPR011016 GO:0008270
Sebi81g00152 229 MobiDBLite consensus disorder prediction 200 229 - -
Sebi81g00152 229 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi81g00152 Sebi-Chr81 2129855 2132291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi81g00152 20 67 C3H Transcription Factor Family AT2G37950 44.898 1.87e-07 48.1