Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi81g00100 ATGGAAGCTAGATTTGGTGGAGAAGCTTATCATTTTTATGGTGTGGGTGCTTCCTCGGATTTGAGGGTTGTGGGGAAGAGGTCCCCAGAATGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATAGCTAGTCGGGTGAATCCAGTGCCAGCAGATGGTGTGGGAGTGGGACAGCGTTTTTTCCCTCTTGAGTCTGGGATTCCGGCCTCCAACAGCTCTTCTTCCTGCTCTGAGGAAGCAGATCTTAGGAATCCAAAAGGGAACAGGGAAGGGGAGAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGATTTGAATGAGGAAGCAGGTACCCTTAGTTTAAAGCTTGGTGGGCATGCTTCTCCAATGGTGGATAGGGAGATTGCGGGATGGGATGGTATGAATGGTAAAAAAAGCAGAGTAGCTGGAGGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGTGGTGCAGATCTGACCAGGGCTAAGGATTATCACAGGCGTCATAAAGTTTGTGAGATGCACTCCAAGGCCAGCAGGGCGCTTGTGGGCAATGCAATGCAGAGGTTCTGTCAACAATGTAGTAGGTAA 600 0.4867 MEARFGGEAYHFYGVGASSDLRVVGKRSPEWDLNDWRWDGDLFIASRVNPVPADGVGVGQRFFPLESGIPASNSSSSCSEEADLRNPKGNREGEKKRRVIVLEDDDLNEEAGTLSLKLGGHASPMVDREIAGWDGMNGKKSRVAGGTSNRAVCQVEDCGADLTRAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi81g00100 199 ProSiteProfiles Zinc finger SBP-type profile. 150 199 IPR004333 GO:0003677
Sebi81g00100 199 MobiDBLite consensus disorder prediction 70 92 - -
Sebi81g00100 199 Pfam SBP domain 153 199 IPR004333 GO:0003677
Sebi81g00100 199 SUPERFAMILY SBT domain 151 199 IPR036893 GO:0003677|GO:0005634
Sebi81g00100 199 Gene3D - 148 199 IPR036893 GO:0003677|GO:0005634
Sebi81g00100 199 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 73 199 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi81g00100 Sebi-Chr81 1440984 1441583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi81g00100 1 199 SBP-box Gene Family AT3G60030 42.647 3.20e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi81g00100 SBP 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi81g00100 - - gmx:100814273 337.806