Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi81g00065 ATGGCTTCTTCCATTGCAGCCTTTTCTTCCATATACCAAACCTCCTCTCTTAAAAGACCAACTGCTACAACGGCCTCCGTTTCGTTATCCCGCTTCAACAACACCCTTCTCCTCCGAACTCACCCCAACAAACCCACACTCTCTTTTGTTACTTCTGCCATTGCTACTCCCAACTCTTCCCTCCTCACTGAACAAGCCTTCAAGGGCACTCTTGGTTTCGACGACCAATTTCGCTATGATTATGAGGCCGAGACCCCTGTCACTGTTAATGAGGACGAGCTCGACATTTCCAAGCTGGGTTTGCCTTCGCAACTCGTTGATTCACTCCAGAAGCGTGGAATCACTAATCTTTTCCCCATTCAGAGAGCTGTGTTACTGCCTGCACTAGAAGGTAGAGATATCATTGCTCGGGCAAAGACTGGGACTGGCAAGACATTAGCTTTTGGAATTCCAATTATTAAAAGTCTCAACGATGATGAACGAAGTCCTCAAAGGCGGTCTGGTCGTCTTCCGAAAGTATTGGTCCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATAAAAGAATCTGCACCTTATCTAAACACAGTTTGTGTCTATGGTGGTGTTTCATATGTAACCCAGCAAAATGCACTCTCGCGCGGTGTTGATGTGGTGGTTGGAACACCTGGCAGAATAATTGACCTAATAAATGGGAACACCCTTAAACTGAGTGAAGTTCAGTATTTGGTCCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTTGAGGTAATTTTAGAAAAGGTCCCATCTCGGCGGCAGACCATGCTTTTTTCTGCAACCATGCCGGGTTGGGTGAAGAAACTGTCAAGAAAATATTTGAACAACCCATTGACAATTGATTTGGTCGGTGAGAAAGAAGAAAAGCTCGATGAAGGGATCAAACTTTATGCTATATCAGCCACTGCAACTTCAAAGCGGACAATGCTTTCAGATCTTATAACTGTTTATGCAAAGGGTGGGAAGGCTATTGTTTTCACACAGACAAAAAGGGATGCTGATGAAGTATCATTGTCACTGACAAACAGTATAGCTTCTGAAGCACTTCATGGTGATATCTCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCAAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATCCTGAGACTTTTGTTCATCGCTCTGGTCGTACTGGACGTGCGGGAAAAGAGGGTACTGCTGTTCTAATGTACACCAGTAGCCAGAAGAGAACCGTTAGATCCCTTGAGCGTGATGTAGGCTGCAAATTTGAATTTATTAGTCCACCAGCTATGAAAGAAATTTTGGAATCATCTGCTGAGCAAGTTGTTGCTACACTAAGTAGAGTTCATCCTGAGTCTATTGAGGTTTTCACTGCAACTGCACAAAAACTGGTTGAGGAACAAGGAGCAAGTGTTCTTGCAGCTGCACTAGCACAGCTGAGTGGATTCTCTCGACCTCCATCATCCAGGTCTCTTATCAACCATGAACAGGGATGGATTACGTTACAACTGACTCGAGATCCAGATACTTCTAGAAGATCTCTTTCTGTTAGATCAGTCACGGGGTTTCTTTCTGATGTTTATTCGCCAGCTGCTGATGAAGTTGGAAAGATACATTTAATTGCAGATGAAAGGATTCAAGGAGCTGTTTTTGATCTTCCGGAGGACATTGCTAAAGAGTTACTCAATAAGGACATACCACCAGGAAACACTATTTCCAAGATCACCAAGTTACCTCCTTTGCAAGATGATGGACCTCCAAGTGATTACTATGGAAAGTTTTCTGACAGAGATCAAAGTAACCGAAGGCAAAGAGGTTCTAGGGACCGGGGAGGTTTTAAAACCTCATGGGGACGGGACAGGGACCAAGACTCTGGTGATGAGTTTGGTGATTCATATGGGAGAGGTGGTAGAAGTTACAGATCTGGCAACAGCAAGTCTCGAGATGACTGGCTAATTGGAGGCAGACGATCAAGCAGAGGCAGCTATGGAGGGGCCTGTTTTAATTGTGGACTATCTGGGCATCGGGCATCGGAATGTCCCAAAAAACGAGACTTTTTTTAA 2184 0.4428 MASSIAAFSSIYQTSSLKRPTATTASVSLSRFNNTLLLRTHPNKPTLSFVTSAIATPNSSLLTEQAFKGTLGFDDQFRYDYEAETPVTVNEDELDISKLGLPSQLVDSLQKRGITNLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPIIKSLNDDERSPQRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNTLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKVPSRRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEKEEKLDEGIKLYAISATATSKRTMLSDLITVYAKGGKAIVFTQTKRDADEVSLSLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMYTSSQKRTVRSLERDVGCKFEFISPPAMKEILESSAEQVVATLSRVHPESIEVFTATAQKLVEEQGASVLAAALAQLSGFSRPPSSRSLINHEQGWITLQLTRDPDTSRRSLSVRSVTGFLSDVYSPAADEVGKIHLIADERIQGAVFDLPEDIAKELLNKDIPPGNTISKITKLPPLQDDGPPSDYYGKFSDRDQSNRRQRGSRDRGGFKTSWGRDRDQDSGDEFGDSYGRGGRSYRSGNSKSRDDWLIGGRRSSRGSYGGACFNCGLSGHRASECPKKRDFF 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi81g00065 727 FunFam Nucleolar RNA helicase II 323 513 - -
Sebi81g00065 727 SUPERFAMILY Retrovirus zinc finger-like domains 692 725 IPR036875 GO:0003676|GO:0008270
Sebi81g00065 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 475 IPR001650 -
Sebi81g00065 727 Pfam Zinc knuckle 706 722 IPR001878 GO:0003676|GO:0008270
Sebi81g00065 727 Gene3D - 95 305 IPR027417 -
Sebi81g00065 727 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 90 659 - -
Sebi81g00065 727 SMART c2hcfinal6 706 722 IPR001878 GO:0003676|GO:0008270
Sebi81g00065 727 Gene3D - 694 725 - -
Sebi81g00065 727 MobiDBLite consensus disorder prediction 635 671 - -
Sebi81g00065 727 Gene3D - 317 520 IPR027417 -
Sebi81g00065 727 MobiDBLite consensus disorder prediction 603 703 - -
Sebi81g00065 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 456 IPR027417 -
Sebi81g00065 727 CDD GUCT_Hera 529 609 - -
Sebi81g00065 727 FunFam ATP-dependent RNA helicase RhlE 86 304 - -
Sebi81g00065 727 SMART helicmild6 355 435 IPR001650 -
Sebi81g00065 727 ProSiteProfiles Zinc finger CCHC-type profile. 707 722 IPR001878 GO:0003676|GO:0008270
Sebi81g00065 727 Pfam Helicase conserved C-terminal domain 328 435 IPR001650 -
Sebi81g00065 727 Pfam DEAD/DEAH box helicase 118 290 IPR011545 GO:0003676|GO:0005524
Sebi81g00065 727 CDD SF2_C_DEAD 315 444 - -
Sebi81g00065 727 CDD DEADc 105 302 - -
Sebi81g00065 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 301 IPR014001 -
Sebi81g00065 727 SMART ultradead3 113 318 IPR014001 -
Sebi81g00065 727 Pfam GUCT (NUC152) domain 522 622 IPR012562 GO:0003723|GO:0004386|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi81g00065 Sebi-Chr81 881322 887184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi81g00065 82 457 Eukaryotic Initiation Factors Gene Family AT1G72730 36.434 1.13e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi81g00065 - - pcin:129296705 1075.46