Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi81g00063 | ATGTCTTCCTCAAGGCCTAGCCAATCATCCAGCAATTCAGGGAGATCAAGACATAGTGCTAGGATTATTGCTCAAACCACTGTAGATGCAAAACTCCAAGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCCAGTTCAGTGCGGGTCTCTGGTACAGCTGATGGAGACCATCAACCAAGGTCCAGCAAAGTAACAACAGCTTACCTCAATCACATACAGAGAGGCAAGCTGATCCAGCCTTTTGGGTGCCTGCTAGCTTTAGATGAGAAAACATATAAGGTCATTGCATACAGTGAGAATGCTCCTGAAATGCTGACCATGGTGAGTCATGCTGTCCCAAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACTGACATAAGAACTATCTTCACTGCGCCAAGTGCTTCTGCATTACAGAAGGCACTGGGATTTGGGGAGGTTTCCCTTCTTAACCCCATCCTTGTTCATTGCAAGACTTCTGGGAAGCCCTTTTACGCAATTATCCATCGAGTTACTGGTAGTTTGATCATTGACTTTGAGCCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCAGGCGCCTTGCAATCTTACAAGCTTGCTGCCAAAGCAATTACCCGATTGCAATCTTTGCCTAGTGGGAGCATGGAAAGGCTCTGTGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAGGTGATTGCTGAGATAACAAAGCCAGGCCTAGAGCCATATCTGGGTTTGCACTATCCAGCCACTGATATTCCCCAGGCTGCACGCTTTTTGTTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCATGCAAAACATGTGAAGGTTCTTCAAGATGAAAAGCTTCCATTTGATTTGACTTTGTGTGGCTCAACCTTAAGGGCTCCTCATAGTTGCCATTTGCAATACATGGCGAACATGGATTCAATTGCTTCCCTGGTTATGGCAGTTGTAGTCAATGACAGTGATGAAGATGGGGACAGCTCTGATGCAGTTCAGCCACAAAAGAGAAAGAGACTCTGGGGTTTGGTAGTTTGCCATAACACTACTCCCAGATTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAGTTTCTGGCTCAAGTATTTGCTATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGATTCTTGAGAAGAATATCCTGCGCACCCAGACACTCTTGTGTGACATGCTGATGCGAGATGCACCCCTAGGTATTGTATCACAGAGTCCCAATATAATGGATCTAGTGAAGTGTGATGGGGCTGCTCTCTTGTATAAAAACAAGGTCTGGATGTTAGGAATGGCACCAAGTGAATCCCAGATAAGAGAGATAGCTTTATGGCTGTCTGAATACCATATGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGGTTCCCAGGGTCTCTTTCTCTTGGTGACACTGTATGTGGAATGGCAGCAGTTAGAATAACTGCAAAAGACATAGTTTTCTGGTTTCGGTCACACACTGCTGCAGAAATTCGATGGGGTGGTGCAAAGCATGAACCTGGTGAAAAGGATGATGGTAGGAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGTCTAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATTCATTCATTGCAGTTAATACTGAGGAATGCATTCAAAGATACAGAGAGTATGGATTTAAACACAAATGCAATCAATACGAGACTAAGTGATTTGAAGATTGAAGGGATGCAGGAACTGGAAGCAGTGACAAGTGAGATGGTTAGGTTAATTGAAACAGCAACAGTGCCTATTTTGGCAGTGGATGTTGATGGGCTGGTCAATGGGTGGAATATAAAAATTGCTGAATTGACAGGTCTTCCAGTTGGTGAAGCTATTGGAAAGCATTTACTCACACTTGTTGAGGATTCTTCAACTGACAGAGTCAAGAAGATGCTTGACTTGGCACTGTCGGGTGAAGAAGAGAAGAATGTCCAATTCGAAATCAAAACACATGGATCTAAGATGGATTCTGGCCCTATTCGTTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCGAGAGAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAAAAGACTGTCATGGACAAATTCACCCGAATTGAAGGTGATTACAAGGCAATTGTACAGAACCCCAATCCATTAATCCCCCCTATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGACAAAATTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTGGGAGAGGTTTTTGGTACTCACATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTTGGCATTGTACTCAATAGAGCCATGACTGGTTTGGAAACTGAGAAGGTTGCCTTTGGTTTCTTTGCTCGGAATGGCAAGTATGTTGAGTGCCTGCTTTCTGTGAGTAAGAAATTGGACATTGAGGGCATAGTTACTGGGGTCTTCTGCTTCTTGCAGCTAGCTAGTCCAGAGCTGCAACAAGCATTACATGTTCAGCGGCTATCTGAACAAACTGCTCTGAAGAGACTGAAAGCATTAACTTATATGAAAAGGCAGATCAGGAATCCTTTGTCTGGGATTATGTTTTCTCGGAAAATGTTGGAGGGTACTGACTTGGGAACAGAACAAAAACGACTTTTGCATACTAGTGCTCAGTGCCAGCGCCAGCTTAGCAAAATTCTTGATGACTCAGATCTTGACAGCATCATTGATGGCTACTTGGATCTTGAGATGGCTGAATTTACTCTGCATGATGTACTGGTTACCTCCCTTAGTCAAGTCATGACAAAGAGTAATGCAAAGGGCATCCGAATAGTCAATGATGTTGCTGAACATATCATGATGGAAACGTTATATGGTGATAGTCTTAGGCTTCAGCAGGTCCTTGCTGACTTTTTACTAATTTCCATCAATTTTACACCAAATGGAGGTCAGATTGTCATAGCAGCTTCTCTAACCAAAGAACAGTTAGGGCAATCTGTCCATCTTGTTAATGTGGAGCTCAGCATAACACATGGTGGTAGTGGGGTGCCAGAAGCATTGCTGAACCAGATGTTTGGAAGTAATGGATTAGAATCTGAAGAGGGTATTAGCCTGCTCATCAGTAGAAAGCTGCTAAAGCTGATGAATGGAGATGTTCGTTATCTAAGGGAAGCAGGCAAATCATCTTTTATGCTATCAGTTGAACTTGCTGCAGCTCATAAGTTGAAAGCTTGA | 3375 | 0.4323 | MSSSRPSQSSSNSGRSRHSARIIAQTTVDAKLQATFEESGSSFDYSSSVRVSGTADGDHQPRSSKVTTAYLNHIQRGKLIQPFGCLLALDEKTYKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSSDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWMLGMAPSESQIREIALWLSEYHMDSTGLSTDSLSDAGFPGSLSLGDTVCGMAAVRITAKDIVFWFRSHTAAEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKDTESMDLNTNAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAIGKHLLTLVEDSSTDRVKKMLDLALSGEEEKNVQFEIKTHGSKMDSGPIRLVVNACASRDLRENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEVFGTHMACCRLKNQEAFVNFGIVLNRAMTGLETEKVAFGFFARNGKYVECLLSVSKKLDIEGIVTGVFCFLQLASPELQQALHVQRLSEQTALKRLKALTYMKRQIRNPLSGIMFSRKMLEGTDLGTEQKRLLHTSAQCQRQLSKILDDSDLDSIIDGYLDLEMAEFTLHDVLVTSLSQVMTKSNAKGIRIVNDVAEHIMMETLYGDSLRLQQVLADFLLISINFTPNGGQIVIAASLTKEQLGQSVHLVNVELSITHGGSGVPEALLNQMFGSNGLESEEGISLLISRKLLKLMNGDVRYLREAGKSSFMLSVELAAAHKLKA | 1124 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi81g00063 | 1124 | Gene3D | PAS domain | 763 | 875 | - | - | |
Sebi81g00063 | 1124 | Pfam | PAS fold | 620 | 734 | IPR013767 | GO:0006355 | |
Sebi81g00063 | 1124 | Pfam | PAS fold | 750 | 872 | IPR013767 | GO:0006355 | |
Sebi81g00063 | 1124 | CDD | HisKA | 899 | 945 | IPR003661 | GO:0000155|GO:0007165 | |
Sebi81g00063 | 1124 | Pfam | PAS fold | 69 | 185 | IPR013654 | GO:0006355 | |
Sebi81g00063 | 1124 | SUPERFAMILY | GAF domain-like | 409 | 587 | - | - | |
Sebi81g00063 | 1124 | MobiDBLite | consensus disorder prediction | 43 | 63 | - | - | |
Sebi81g00063 | 1124 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 318 | 327 | IPR013516 | - | |
Sebi81g00063 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 74 | 186 | IPR035965 | - | |
Sebi81g00063 | 1124 | CDD | PAS | 761 | 872 | IPR000014 | - | |
Sebi81g00063 | 1124 | NCBIfam | PAS domain S-box protein | 624 | 740 | IPR000014 | - | |
Sebi81g00063 | 1124 | SMART | gaf_1 | 218 | 411 | IPR003018 | GO:0005515 | |
Sebi81g00063 | 1124 | Pfam | GAF domain | 218 | 401 | IPR003018 | GO:0005515 | |
Sebi81g00063 | 1124 | SMART | pas_2 | 749 | 818 | IPR000014 | - | |
Sebi81g00063 | 1124 | SMART | pas_2 | 619 | 685 | IPR000014 | - | |
Sebi81g00063 | 1124 | PRINTS | Phytochrome signature | 431 | 451 | IPR001294 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | PRINTS | Phytochrome signature | 712 | 729 | IPR001294 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | PRINTS | Phytochrome signature | 549 | 567 | IPR001294 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | PRINTS | Phytochrome signature | 318 | 339 | IPR001294 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | PRINTS | Phytochrome signature | 516 | 535 | IPR001294 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | PRINTS | Phytochrome signature | 620 | 636 | IPR001294 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | PRINTS | Phytochrome signature | 233 | 252 | IPR001294 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | PRINTS | Phytochrome signature | 639 | 654 | IPR001294 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | PRINTS | Phytochrome signature | 732 | 752 | IPR001294 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | PRINTS | Phytochrome signature | 133 | 155 | IPR001294 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | Pfam | His Kinase A (phospho-acceptor) domain | 899 | 953 | IPR003661 | GO:0000155|GO:0007165 | |
Sebi81g00063 | 1124 | Gene3D | - | 406 | 579 | IPR043150 | - | |
Sebi81g00063 | 1124 | Gene3D | - | 199 | 562 | IPR029016 | - | |
Sebi81g00063 | 1124 | ProSiteProfiles | PAS repeat profile. | 617 | 687 | IPR000014 | - | |
Sebi81g00063 | 1124 | SMART | HisKA_10 | 894 | 959 | IPR003661 | GO:0000155|GO:0007165 | |
Sebi81g00063 | 1124 | PIRSF | Phytochrome_conventional | 1 | 1124 | IPR012129 | GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803 | |
Sebi81g00063 | 1124 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Sebi81g00063 | 1124 | Gene3D | - | 957 | 1121 | IPR036890 | - | |
Sebi81g00063 | 1124 | ProSiteProfiles | PAC domain profile. | 690 | 746 | IPR000700 | - | |
Sebi81g00063 | 1124 | Gene3D | PAS domain | 611 | 748 | - | - | |
Sebi81g00063 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 764 | 870 | IPR035965 | - | |
Sebi81g00063 | 1124 | ProSiteProfiles | Histidine kinase domain profile. | 901 | 1120 | IPR005467 | - | |
Sebi81g00063 | 1124 | PANTHER | OS08G0260000 PROTEIN | 67 | 955 | - | - | |
Sebi81g00063 | 1124 | SMART | HKATPase_4 | 1006 | 1118 | IPR003594 | - | |
Sebi81g00063 | 1124 | Coils | Coil | 398 | 418 | - | - | |
Sebi81g00063 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 623 | 730 | IPR035965 | - | |
Sebi81g00063 | 1124 | ProSiteProfiles | PAS repeat profile. | 750 | 802 | IPR000014 | - | |
Sebi81g00063 | 1124 | FunFam | Phytochrome | 406 | 537 | - | - | |
Sebi81g00063 | 1124 | Gene3D | PAS domain | 73 | 321 | - | - | |
Sebi81g00063 | 1124 | SUPERFAMILY | GAF domain-like | 198 | 398 | - | - | |
Sebi81g00063 | 1124 | CDD | PAS | 628 | 734 | IPR000014 | - | |
Sebi81g00063 | 1124 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1006 | 1115 | IPR003594 | - | |
Sebi81g00063 | 1124 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 956 | 1109 | IPR036890 | - | |
Sebi81g00063 | 1124 | Pfam | Phytochrome region | 414 | 589 | IPR013515 | GO:0006355|GO:0009584 | |
Sebi81g00063 | 1124 | FunFam | Phytochrome | 613 | 744 | - | - | |
Sebi81g00063 | 1124 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 218 | 391 | IPR016132 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi81g00063 | Sebi-Chr81 | 836082 | 841390 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi81g00063 | 1 | 1121 | Histidine Kinase Gene Family | AT1G09570 | 81.194 | 0.0 | 1925 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi81g00063 | K12120 | - | gmx:100790763 | 2004.56 |