Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi81g00060 ATGGGTATTAAGGGTTTAACAAAGCTTTTAGCTGACAATGCCCCCAAAGCCATGAAAGAGAATAAATTCGAGAGCTACTTTGGCCGCAAGATCGCCGTTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTAGTGGGAAGAACTGGAACTGAAACGCTAACTAATGAAGCTGGTGAAGTTACTAGTCATTTGCAAGGGATGTTTACGCGGACAATCAGACTTTTAGAAGCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCGGATTTGAAGAAACAAGAGCTGGCAAAACGTTACTCGAAGAGAGCTGAGGCTACTGAGGGCTTGTCAGAAGCCATAGAGGCTGACAATAAGGAAGATATTGAAAAGTATAGTAAACGGACAGTGAAGGTGACAAAGCAGCATAATGAAGACTGCAAAAGACTTTTAAGACTCATGGGAGTGCCTGTTGTTGAGGCACCCTCGGAAGCAGAGGCTCAGTGTGCTGCTCTCTGCAAAGCTGGAAAGGCAAACATGGATTCTTTGACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCGAAAAAAGTTCCAGTGATGGAATTTGATGTTGCAAAGATTTTGGAGGAGTTAAATCTGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGGTGTGATTATTGTGACAACATTCGAGGGATTGGGGGACAGACAGCTTTGAAGCTCATACGTCAACATGGCTCAATTGAAAATATTCTGGAGAACATAAACAGAGAGAGGTACCAGATACCAGATGATTGGCCATATCAGGAGGCTCGGAGGCTTTTTAAAGAACCAATGGTCATAACTGAAGATGAGGAACTTAATCTCAAGTGGTCTAGTCCAGATGAAGAAGGGTTAATGACATTTCTGGTAAATGAGAATGGGTTCAACAGTGATAGGGTGACAAAGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTCTTTAAGCCAGCTGCAAATCCATCTGTACCTATCAAACGGAAGGAAAGCAAATGCATGCTTAGATCTTTCAAACCAGCAATTGAGCATAAGATGTTCTCTCTGCAACTTCCTAACGGGTCAAGGCCCATGGTTTTTGGCAAGTTGAGCTTGCCAATATATAATCTGGGTTCCAAGTTCTCTGTGCCATTGTCTAGAGGTGTCTGCTTTGGTGCCTGA 1233 0.4298 MGIKGLTKLLADNAPKAMKENKFESYFGRKIAVDASMSIYQFLIVVGRTGTETLTNEAGEVTSHLQGMFTRTIRLLEAGMKPVYVFDGKPPDLKKQELAKRYSKRAEATEGLSEAIEADNKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKANMDSLTFGAPKFLRHLMDPSSKKVPVMEFDVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPMVITEDEELNLKWSSPDEEGLMTFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPAANPSVPIKRKESKCMLRSFKPAIEHKMFSLQLPNGSRPMVFGKLSLPIYNLGSKFSVPLSRGVCFGA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi81g00060 410 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Sebi81g00060 410 Gene3D - 213 280 - -
Sebi81g00060 410 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 361 IPR006084 -
Sebi81g00060 410 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Sebi81g00060 410 FunFam Flap endonuclease 1 10 216 - -
Sebi81g00060 410 SMART xpgn3 1 108 IPR006085 GO:0004518
Sebi81g00060 410 Pfam XPG I-region 150 228 IPR006086 GO:0004518
Sebi81g00060 410 Gene3D - 2 212 - -
Sebi81g00060 410 SMART 53exo3 29 300 IPR002421 GO:0003677
Sebi81g00060 410 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Sebi81g00060 410 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 218 233 IPR006084 -
Sebi81g00060 410 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Sebi81g00060 410 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Sebi81g00060 410 Hamap Flap endonuclease 1 [fen]. 1 341 IPR023426 GO:0016788
Sebi81g00060 410 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 213 347 IPR036279 -
Sebi81g00060 410 SMART xpgineu 147 213 IPR006086 GO:0004518
Sebi81g00060 410 SMART HhH_4 215 248 IPR008918 GO:0003677|GO:0003824
Sebi81g00060 410 CDD PIN_FEN1 4 326 - -
Sebi81g00060 410 SUPERFAMILY PIN domain-like 2 228 IPR029060 -
Sebi81g00060 410 FunFam Flap endonuclease 1 213 280 - -
Sebi81g00060 410 CDD H3TH_FEN1-Euk 216 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi81g00060 Sebi-Chr81 817157 821433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi81g00060 1 374 Core DNA Replication Machinery Family AT5G26680 83.684 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi81g00060 K04799 - cave:132187694 689.108