Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi81g00054 ATGGCTAGGAGGAAGGTGAGGGTTGCCTATATCCCCAATGACTCAACAAGGAAAACAACATACAAGAAAAGGAAGAAAAGCATCATAAAGAAGGTGAGTGAACTCACTGTTCTCTGCGGAGTTCAGGCATGTGCTATAATTTCTAGTCCTTTTGATTCTCAAATGGAGGTTTGGCCAAGCCCAGAGGAAGCAAAACAGGTGATTGATAGGTATAAGAATGCACCTGTGATTGACGAAAGCAAGAATGTGAATCAAGAGAGTTTTCTCATGCAAAGGATTGACAAGGCCAAGGACCAACTGAAGAAGGCACCATGA 315 0.4286 MARRKVRVAYIPNDSTRKTTYKKRKKSIIKKVSELTVLCGVQACAIISSPFDSQMEVWPSPEEAKQVIDRYKNAPVIDESKNVNQESFLMQRIDKAKDQLKKAP 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi81g00054 104 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sebi81g00054 104 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Sebi81g00054 104 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sebi81g00054 104 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi81g00054 104 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi81g00054 104 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi81g00054 104 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Sebi81g00054 104 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Sebi81g00054 104 PANTHER MADS BOX PROTEIN 3 97 - -
Sebi81g00054 104 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi81g00054 Sebi-Chr81 709650 709964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi81g00054 1 96 Type I MADS-box Gene Family AT3G05860 47.423 7.44e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi81g00054 SRF-TF 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi81g00054 - - gmx:100792290 139.428