Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi81g00044 ATGGCTCGGAGGATGCTGAAACTTGCCTATATCTCTGATGAGGCGACAAGGAAAGCAACATATAGGAAAAGGAAGAAGGGTATCCTAAAGAAGATGAATGAACTCACCACACTTTGCGGAATTTTCGCATGTGCTATAATTTTCAATCCCTTTGATTCTCAGGTAGAGGTTTGGCCAAACCTAGAGGGAGCCAAGCAAGTGATTGAGAGGTATAAGAATACACCTGTGATAGATGAAAGCAAGAATGTGAACCAAGAGAGCTTTCTCACAAAGATGATTGCCAAACGCCAAGATCACTTAAAGAAGATGCGACAAGACAATCGTGAAAAGGAACTAATCGAGGTTGTGTTCAAATATATGCGAGATAAAACCCTTCCAAACATGCCCTTTGGAGATACGAACGACCTCAATCAAGTTTCAGACATGCCCTTTGAAGGTGTGATTGATCTAAATGAGTTGCCATACATGCCCCTTGAAGATGCGAATGATCTCAACAAGCTGATTGAGAAGAATTTGAATGAAATTGAAATTAATCTTGCTAAGCTTAATTATTAG 555 0.4 MARRMLKLAYISDEATRKATYRKRKKGILKKMNELTTLCGIFACAIIFNPFDSQVEVWPNLEGAKQVIERYKNTPVIDESKNVNQESFLTKMIAKRQDHLKKMRQDNREKELIEVVFKYMRDKTLPNMPFGDTNDLNQVSDMPFEGVIDLNELPYMPLEDANDLNKLIEKNLNEIEINLAKLNY 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi81g00044 184 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Sebi81g00044 184 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Sebi81g00044 184 Coils Coil 158 184 - -
Sebi81g00044 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi81g00044 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi81g00044 184 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sebi81g00044 184 PANTHER MADS BOX PROTEIN 7 141 - -
Sebi81g00044 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sebi81g00044 184 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sebi81g00044 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi81g00044 Sebi-Chr81 579702 580256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi81g00044 1 169 Type I MADS-box Gene Family AT5G48670 42.353 6.12e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi81g00044 SRF-TF 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi81g00044 - - gmx:100792290 172.94