Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi81g00040 ATGGGTGCTGATCTTAAAGCTGATTTGTCCAAGAAAACTCCCATTGCTGGTCTTAAGGTTTGGGAAATAATTGGAATTGCAGTTGGATTGTCTATTATTGTTATCCTCTCTGTGCTCTCATTTTGCCTTACTTCACGCAAGAAATCTAGAAAGGCTAGAGACAAGGTTCCTGTTAGTCAAATACCTACTGTCTCAAAGGAAATCAAAGAAGTAAGGGTTGAGCAAGTACCAGCAAATGGATTTGTTCCCCGTGATGGAATACTTCTTACAATTCATGATAAATCCAGTGATAGAGAATCAGACAAAGTTATGGTTCATTTAGGTGTGGGGAATATGAAGCATGGGGATAGTGGAAGTCACTCAGATTCATTTCATGGAGGTGGGTCACAATCAGGGGAAGAAGGTAGCTCTGGCACGATTAAAGTGTACAAGCCCTCTTCTTCATACCATATAACAGCTCCTTCACCTCTGTCTGGCCTTCCAGAGTTCTCTCACTTGGGTTGGGGTCACTGGTTTACATTGAGGGATCTTGAACTTGCTACTAATCGTTTTTCAAAAGAAAATGTCCTTGGTGAGGGTGGTTATGGAGTTGTTTACCGGGGAAAGTTGATCAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAACAACATTGGCCAAGCTGAGAAAGAATTTAGAGTGGAAGTCGAAGCTATTGGCCATGTCCGACATAAAAATTTGGTTCGTCTATTGGGGTACTGCATTGAGGGGACTCACAGGATGTTAGTGTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCGTCATCATGGGTATCTTACTTGGGAAGCACGTATCAAGATTCTTCTTGGCACAGCTAAGGCGCTTGCATATTTGCATGAAGCGATTGAGCCGAAGGTGGTTCACCGAGATATCAAGTCAAGCAACATATTAATTGATGACGACTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTACTAGGTTCTGGGACAAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGTTTAGTGAATTCACCGAATAATCCTCAAGCATTAGGTTTGAGATGA 1098 0.4226 MGADLKADLSKKTPIAGLKVWEIIGIAVGLSIIVILSVLSFCLTSRKKSRKARDKVPVSQIPTVSKEIKEVRVEQVPANGFVPRDGILLTIHDKSSDRESDKVMVHLGVGNMKHGDSGSHSDSFHGGGSQSGEEGSSGTIKVYKPSSSYHITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGKLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGSGTSHVATRVMGTFGLVNSPNNPQALGLR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi81g00040 365 Gene3D Transferase(Phosphotransferase) domain 1 260 355 - -
Sebi81g00040 365 MobiDBLite consensus disorder prediction 122 139 - -
Sebi81g00040 365 FunFam Os07g0541700 protein 260 349 - -
Sebi81g00040 365 ProSitePatterns Protein kinases ATP-binding region signature. 190 213 IPR017441 GO:0005524
Sebi81g00040 365 Gene3D Phosphorylase Kinase; domain 1 165 259 - -
Sebi81g00040 365 SMART serkin_6 184 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi81g00040 365 ProSiteProfiles Protein kinase domain profile. 184 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi81g00040 365 MobiDBLite consensus disorder prediction 116 139 - -
Sebi81g00040 365 SUPERFAMILY Protein kinase-like (PK-like) 158 351 IPR011009 -
Sebi81g00040 365 PANTHER OS01G0323000 PROTEIN 5 354 - -
Sebi81g00040 365 Pfam Protein kinase domain 185 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi81g00040 365 FunFam Putative receptor-like protein kinase 166 259 - -
Sebi81g00040 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi81g00040 Sebi-Chr81 539186 541020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi81g00040 158 351 Trihelix Transcription Factor Family AT1G23540 51.282 1.06e-63 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sebi81g00040 Pkinase 5.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi81g00040 - - gmx:100787014 613.994