Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi81g00032 ATGCCAGTAAAGAAGTTTTACTGCGATTATTGCGATAGGCAATTCCCGGACACACCAGCGGATCGGAAGCGACACAATCGTGGCATTCAGCACCAACAAGCCAAAGCTCGTTGGTACGATTCCTTCAAATTCGAACAACAACAACCTCATCATCTTCCTATTCCATCCCCTAAACCCCTCTGTTTTCACTTCGTCAACACGGGATTTTGCCGTTACGGCGACTCCTGCAAATATATGCATCCCAATCCCAACAATATACCGCAGCCACAAGTTGCAGGGAATGTGATAGTAGGAGATAGAGATAGCATGGGAACGGGAATGGGAGTTTCATGGGACAATTTACCCCCATCGCTACAGCCTCCGCCTGAGGGTGGATATCCCCAACTTCCCTTTGTTGATTGGGGTTAG 408 0.4828 MPVKKFYCDYCDRQFPDTPADRKRHNRGIQHQQAKARWYDSFKFEQQQPHHLPIPSPKPLCFHFVNTGFCRYGDSCKYMHPNPNNIPQPQVAGNVIVGDRDSMGTGMGVSWDNLPPSLQPPPEGGYPQLPFVDWG 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi81g00032 135 Gene3D Classic Zinc Finger 3 47 - -
Sebi81g00032 135 PANTHER NUCLEASE-RELATED 1 135 - -
Sebi81g00032 135 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Sebi81g00032 135 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 81 IPR000571 GO:0046872
Sebi81g00032 135 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Sebi81g00032 135 ProSiteProfiles Zinc finger C3H1-type profile. 55 83 IPR000571 GO:0046872
Sebi81g00032 135 MobiDBLite consensus disorder prediction 108 135 - -
Sebi81g00032 135 SUPERFAMILY CCCH zinc finger 59 83 IPR036855 GO:0046872
Sebi81g00032 135 Gene3D - 48 93 - -
Sebi81g00032 135 SUPERFAMILY beta-beta-alpha zinc fingers 4 48 IPR036236 -
Sebi81g00032 135 SMART c3hfinal6 56 82 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi81g00032 zf-U1 8.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi81g00032 K13152 - gmx:100527203 191.43