Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi81g00019 ATGCAAGGCCAAGAGGATAAGAAGAAGACGATGCTTCCATCACCATCACACACTAAAGTTAGGGGCTTTCAAAGCCTTGTTGAACCTGCCACCAATGCAACTGCTTCTTCTTCCACTGCTGCCGGAAAGCTCTATTCTCCCCATCACTCTGACTCGGACACTTTCTACTCCAAACTCACTGAGTTATTGGACTCCTCTGGACTCAGTCTAATTTTCAATGTCCAAGAAACATTGTTGGACCTGCACCTGTTTTACTTGGAGGTGACCAGAAGAGGAGGATATCACCAGGTTGGCCGAGAAAAGAAATGGGGTGAAGTGGTCTCTGCCCTAAAATTGGAAGGCAATAATGCAAAATTATCTGCTCAAGTTGAAAAGCTCTATGCACACCTTCTTTATGAATTTGAGCAATTGTACTTCTACAGGTGTCCTTCAAAGCAACCTGCAGCTAGCAGCAGCAAAGGTCCACTTAAGAGGAAGCAGGATTCAATGGCTAGTTTTTCTCAATTAATGGATAGTGAATATGGTCAGAAGGTGACAAAGATGTGTGAGGACTGCTCTTGCCAAATGAAAGAACAACCAGTGATTCTTCCTCAAATGACAAAGAAACCAAGAAACCAAGTAACAAAGAAACGGCCAGGTGCTCCAGGAGGAAGGAATGCATATCATATATTCCTCAAGAAGGAATGTGCTCGATTGAGAGCTTGTAATCAGGCCTCAGATGGCCCAAAAACCCTAAGAATGGCTGTTGATGCATGGAAGAAGATGTCTGAGATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAGGAAAAATTTAAGAAAGCAATGATCACTAGCAATAAACAGCAGAACATGGAAGAGAAGGGGCCAAGTGTGTGTGGTGGTGACTACTATGTAACTTCACAACCTGAGGCAGATAATTCCCTTGTCAATAAAGCAGCAGTCAACTTAGCTCTTAAAATGACTGAAAAGGATCCTTTACTCCTGATGGACTGGGATGCTTGTTGTTCACTAGATTTTCCAACTGGGGAACAAGAGTAA 1047 0.4308 MQGQEDKKKTMLPSPSHTKVRGFQSLVEPATNATASSSTAAGKLYSPHHSDSDTFYSKLTELLDSSGLSLIFNVQETLLDLHLFYLEVTRRGGYHQVGREKKWGEVVSALKLEGNNAKLSAQVEKLYAHLLYEFEQLYFYRCPSKQPAASSSKGPLKRKQDSMASFSQLMDSEYGQKVTKMCEDCSCQMKEQPVILPQMTKKPRNQVTKKRPGAPGGRNAYHIFLKKECARLRACNQASDGPKTLRMAVDAWKKMSEIEKQPYVEESKKNKEKFKKAMITSNKQQNMEEKGPSVCGGDYYVTSQPEADNSLVNKAAVNLALKMTEKDPLLLMDWDACCSLDFPTGEQE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi81g00019 348 CDD HMG-box_SF 218 264 - -
Sebi81g00019 348 Gene3D - 35 159 IPR036431 GO:0003677
Sebi81g00019 348 MobiDBLite consensus disorder prediction 1 20 - -
Sebi81g00019 348 SUPERFAMILY HMG-box 197 278 IPR036910 -
Sebi81g00019 348 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 214 282 IPR009071 -
Sebi81g00019 348 SMART bright_3 50 140 IPR001606 GO:0003677
Sebi81g00019 348 SUPERFAMILY ARID-like 50 141 IPR036431 GO:0003677
Sebi81g00019 348 SMART ARID_2 46 135 - -
Sebi81g00019 348 ProSiteProfiles ARID domain profile. 49 139 IPR001606 GO:0003677
Sebi81g00019 348 Pfam ARID/BRIGHT DNA binding domain 52 135 IPR001606 GO:0003677
Sebi81g00019 348 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 168 309 - -
Sebi81g00019 348 Gene3D High mobility group box domain 205 294 IPR036910 -
Sebi81g00019 348 Pfam HMG-box domain 217 281 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi81g00019 Sebi-Chr81 235687 238244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi81g00019 79 167 ARID Transcription Factor Family AT1G76110 36.264 1.97e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sebi81g00019 ARID 5.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi81g00019 - - var:108325455 332.413