Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi81g00016 ATGGGCTGGCCCAAACAAAAAACTCAGTTCGCGAAAGTTCTTTTCAGAGTCGCCATTACCCACCTCGTCTCTGGCCATAATCTATTGTTTTGTTTGTTCACTTCTCGTGGTTTCTCTCTGCTCTGTCGTGTCAAGTGCACTTCACCAGCACAGCACAGTATGGATTTCCAGGGATTCTTAAACGACTTGCAGGATTGGGAACTTTCTAGAAAGGACAAAGCACGAAAAGTGAAGTCACAAAAGGAAAATGTTGTGGGTGCGGAGAAGGCATCAAGAGGAGATACTATTTCTTCAGGACAGTATGGTTTCTCAAGAAACAATGATCCTTTCAGTCGTGTGCGTAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCCGAGAAAGATCTGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATCGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCTATATCAAGCTTAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACAGCCAGAAAAGAACTTGGGAAAATTAAAGAATCCATGGAAGATGCGGAGTTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGAGAAAGGAATTCTTCAGAAAGCATCTGGAGCACTAAGAAGCAGTGTCCAGGGAGCTCAAAAATGGGGAAAGTCAGAGACAAAAGTTAATGGAGGCAGAATCCACTCCATTTCACATGATACTCAAAAGTCAGGGCCATCTGAAGTTCATCATCACAATAAGGGTAATGAGCGGCAAATTCCTGCTAAAGAATCATTCTTAATGGAGGAGACTGATAACAGGGATACAAAAGCCAGAAGCAGGACTCAAGGACAAGAAGGGGATGGTTCTAAGGAAGTTTCTAGTTCAAGCAACAGTTTGGAGCAGAGAAATCACAGTACTAGAAAGCTAGAAATGAAAACATCAATTCAACAGCTTGCTTCTCGTGCAGCTTCTCGAGCCATGGCTGAAGCTGCTAAAAACATAACACCACCAACTACCGCTTATCAATTTGAGGCCTCTTGGAGAGGGTTTTCAGGTGATCTTGCTTTGCAGGCTCGTCTATTAAAGGCCATATCTCCCCATGAATTACCGAAAATATTCAAAAATGCCTTATCATCTACCCTGCTAATTGAGATCATCAAGTGTGTTACATCCTTTTTCACTGAAGAGATGGATCTGGCTATCAGTTATATGGAGAATTTGATCAAGGTACCGAGATTTGATATGATCATAATGTGCCTTCCATCAGCAGACAAGGATGACTTACGCAAGATCTGGGATGAAGTGTTCTGTAGTGAGGCAACTCCAATGGAGTATGCAGAGATTCTGGACAACCTCCGATCAAAATTCGGTGTTGGACAATGA 1503 0.4238 MGWPKQKTQFAKVLFRVAITHLVSGHNLLFCLFTSRGFSLLCRVKCTSPAQHSMDFQGFLNDLQDWELSRKDKARKVKSQKENVVGAEKASRGDTISSGQYGFSRNNDPFSRVRSSFVPEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKGILQKASGALRSSVQGAQKWGKSETKVNGGRIHSISHDTQKSGPSEVHHHNKGNERQIPAKESFLMEETDNRDTKARSRTQGQEGDGSKEVSSSSNSLEQRNHSTRKLEMKTSIQQLASRAASRAMAEAAKNITPPTTAYQFEASWRGFSGDLALQARLLKAISPHELPKIFKNALSSTLLIEIIKCVTSFFTEEMDLAISYMENLIKVPRFDMIIMCLPSADKDDLRKIWDEVFCSEATPMEYAEILDNLRSKFGVGQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi81g00016 500 Gene3D Tetratricopeptide repeat domain 117 223 IPR011990 GO:0005515
Sebi81g00016 500 SUPERFAMILY TPR-like 123 239 IPR011990 GO:0005515
Sebi81g00016 500 Pfam Tetratricopeptide repeat 129 157 IPR001440 GO:0005515
Sebi81g00016 500 Pfam Tetratricopeptide repeat 158 188 IPR001440 GO:0005515
Sebi81g00016 500 ProSiteProfiles TPR repeat profile. 125 158 IPR019734 GO:0005515
Sebi81g00016 500 MobiDBLite consensus disorder prediction 283 325 - -
Sebi81g00016 500 PANTHER OS05G0129900 PROTEIN 50 498 - -
Sebi81g00016 500 ProSiteProfiles TPR repeat profile. 192 225 IPR019734 GO:0005515
Sebi81g00016 500 MobiDBLite consensus disorder prediction 254 351 - -
Sebi81g00016 500 SMART tpr_5 192 225 IPR019734 GO:0005515
Sebi81g00016 500 SMART tpr_5 159 191 IPR019734 GO:0005515
Sebi81g00016 500 SMART tpr_5 125 158 IPR019734 GO:0005515
Sebi81g00016 500 MobiDBLite consensus disorder prediction 326 342 - -
Sebi81g00016 500 Pfam Potential Monad-binding region of RPAP3 376 465 IPR025986 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi81g00016 Sebi-Chr81 164578 170550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi81g00016 129 195 U-box Gene Family AT3G07370 41.176 1.47e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi81g00016 K23002 - gmx:100784528 688.337