Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi818g00018 ATGGCTTGGATTAAGCATCAAATCCAGCAAAAAGATGGTTACTTGAACTACCCACCACCATACCCTGGTGCTGCTTTTCACAAAGACCCACCAATGTCTTCTTCTTCATCTTCAACAACAACACCTTCATCTTCTGGTACTAAAATCAGTCCAGCTGTTCTTTTCATTATAGTGGTTCTGGCTGTTCTGTTTTTCATTTCTGGTATCCTCCACCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCTTCTGCATCTCCTCAATCTAATAGACACCAGGAAATTTCCACCTCTGATGCTCTCCAAAGGCAGCTTCAGCAGCTTTTCCATCTCCATGATTCTGGTCTGGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCAGTTCAAGGAGATTGTGGGTATGAAAGAGCCTTTTGACTGTGCTGTTTGTCTCTGTGAGTTCTCTGAGAAAGATAAGCTCAGATTGTTACCTATGTGCAGCCATGCTTTTCATATCAGTTGTATAGACACTTGGCTTCTGTCAAATTCCACATGCCCACTTTGTAGAGGAACCCTCCTTACTCCAGGATTTTCTGTTGAAAACCCTATATTTGATTATGATGATCTGAGGGAAGATGATGTGTTCCCTTGTAATGTGGAAAATGCATTCACTACTAGACAAAAAACAGCTGTAGTTGAAGAAACTGTAGAGAAAGGTGTTTTCCCTGTAAGGCTTGGTAAATTCAGGAAGATGAATGTGGAGGCTGGGGAGAATGGTGTAGGAGAAACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGATCTTACCAGTATGTGGTTGGTAATTCAGACCTCCGGGTAGCTTTGAACCATGACAATAAAGGGCATGATACAAGGCTTTCTAAAGGAACAGAACATGATGTGAAGCTTTCAGTGGAAGGGGATATGGAAGCAAAGAAGATTAGTAATGTCAGTAAAGGTGACAGCTTTTCTATTTCCAAAATCTGGTTGTGGCCGAAGAAGGGAAAATCTTTGGAATCTCATACAGGCATGCCATCTTATCTTAATACTGACTTGCATGGGATGAGGGAAACAGAAGGGGTATGA 1098 0.4144 MAWIKHQIQQKDGYLNYPPPYPGAAFHKDPPMSSSSSSTTTPSSSGTKISPAVLFIIVVLAVLFFISGILHLLVRFLIKHPSSSASPQSNRHQEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGMKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSVENPIFDYDDLREDDVFPCNVENAFTTRQKTAVVEETVEKGVFPVRLGKFRKMNVEAGENGVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHDNKGHDTRLSKGTEHDVKLSVEGDMEAKKISNVSKGDSFSISKIWLWPKKGKSLESHTGMPSYLNTDLHGMRETEGV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi818g00018 365 CDD RING-H2_EL5-like 140 183 - -
Sebi818g00018 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 188 IPR013083 -
Sebi818g00018 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 44 333 - -
Sebi818g00018 365 FunFam RING-H2 finger protein ATL46 103 188 - -
Sebi818g00018 365 SUPERFAMILY RING/U-box 120 189 - -
Sebi818g00018 365 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Sebi818g00018 365 SMART ring_2 141 182 IPR001841 -
Sebi818g00018 365 Pfam Ring finger domain 140 183 IPR001841 -
Sebi818g00018 365 MobiDBLite consensus disorder prediction 30 46 - -
Sebi818g00018 365 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi818g00018 Sebi-Chr818 224049 225146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi818g00018 38 340 C3H Transcription Factor Family AT2G18650 41.964 1.13e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi818g00018 - - gmx:100806337 541.962