Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi818g00002 ATGGCTGAGAGGGGTACTTATGGGGGCAGAAGCATGTCTATCAATGACTTGGAGAAGCTTCCCTGCTATAATTATGTTGCCAAAGACAATACAAACAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAACCTCACTACAGGAGATAAGTGCAGATTGTTGCCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTAGACAAATGGCTTCTAAAGACACCCATATGTCCAATTTGCCGATCCAGTGCTGGTTCTCATAGTGGAAACCAAGTTGTAGGTAACAATGACTACTTTATTGAATCTAGGGAGAGCCAAACTGTCACAGGAAGCCAGCCAGATGACAATAGCTTACAGTTAAGAGAGAGCATAGCAAGTGGTCCATCCAGAAATGGTGTAGAAATGAGAGAAAATTCAACATTAGGAAGCCCCAACTCTGGTCACAGAGAAGTAGAATCAGGAGAGCACCAGATAGGTGCAATGCAATTGGAGATCAGATAA 495 0.4384 MAERGTYGGRSMSINDLEKLPCYNYVAKDNTNSPVDCAVCLENLTTGDKCRLLPMCKHSFHAQCVDKWLLKTPICPICRSSAGSHSGNQVVGNNDYFIESRESQTVTGSQPDDNSLQLRESIASGPSRNGVEMRENSTLGSPNSGHREVESGEHQIGAMQLEIR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi818g00002 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 86 IPR013083 -
Sebi818g00002 164 CDD RING-H2_EL5-like 36 79 - -
Sebi818g00002 164 ProSiteProfiles Zinc finger RING-type profile. 37 79 IPR001841 -
Sebi818g00002 164 MobiDBLite consensus disorder prediction 124 145 - -
Sebi818g00002 164 MobiDBLite consensus disorder prediction 124 156 - -
Sebi818g00002 164 Pfam Ring finger domain 36 79 IPR001841 -
Sebi818g00002 164 SMART ring_2 37 78 IPR001841 -
Sebi818g00002 164 SUPERFAMILY RING/U-box 24 89 - -
Sebi818g00002 164 FunFam RING-H2 finger protein ATL2K 12 85 - -
Sebi818g00002 164 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi818g00002 Sebi-Chr818 19644 20138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi818g00002 5 82 C3H Transcription Factor Family AT1G74410 41.026 6.06e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi818g00002 - - lang:109353575 206.838