Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi817g00041 ATGGCAGAGGAGTTTCAAGCTGGTATTTGTGGTGAAACTTGGTGGAATATTAATCCAACAAGAAGTGTGTTCCCTCTTATGAGCTCATCATCAACCTGTTCCGTGGCAGCTAATGATCATGCAGCCAACTATAGCACTTGGCAAACTGATTTTGTAGATTTGAAGGCAACAAGGTCTTGTGCTGAGGAGATTAATAATATCAATATGGTTTCTGATGGTTCTCTGGGTTTTGTTGATGCTCAGAAGGCACAGCAGAGTGAATCAGTTAGTGGTGGAACTGGTGGTAGCATCTTGATGGATTCCACCTTACAAATTATGGGTTTTGGCCTTTCCTCTTCAAATTCATCCAATTGGAATCAGTCTCTATTTGGAAGGCCAGAGAGCAATTTTCACTCTGTGCTTGAAGAAGAAACAGTTATAGATTCTTCCAATAATTCACAAATCCAAAAGGACTGGAGCCCAAAGAATTTCTCATCTGCAGGTGGAAGCCAAGTTTCCACAATTGATGGTTTCAAACAAATGAACCAAGAATTTTCATTAGATGAGCAGAGTCTGAATTGTGTAACAAGCAGCACTGGTGGATTCCCAAATTCCTATGGTTACCCTTCAACGTTGATATATGAGGCTGATCCTCAACCACAATCACAGAATTCACTTTTCACCAACCCCTCTGCTATGTCCTATTCATCCACTCCAACTGTGTATGGGACATCCTCCAATGAACTGTCACCAACTTGGTCTAAAGTCTCTACTTCCCTTATGAAACCCTCCATGCCAAAACAGCAGCTTAGTGGATTGCACTTTTCCAATAACACTCCTTTTTGGAATGCTTCAGCCGAGGCACTTGATGACATAAGAGCAGGAGTTTTTGCTTCTTCATCCCAGGGGCAATACCAAACACCAAATTTTGAAGAGAAAAAACTCAGTAGCCCAAGTAGTACTCTATTAAGCAAGCTAAAGAGAGAAGAGTCTCCCGATACGGGGAAGAAAAGTTGTTCTGAGCTGCCTGCACTTAAGAGGCCAAGAATTGAGACCCCATCTCCATTACCAACTTTTAAGGTTCGGAAAGAGAAACTGGGGGACCGAATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTCCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGCACACCATATATGAAAAATGGAGCTCCCATTCAACAATACCAGGGTTGTGAGAATGGGAAGGAGGCAGAAGGGGAAAAAGAAGATCTAAGAAGCCGAGGGCTGTGTTTGGTACCAATTTCAAGCACATTTCCGGTGACGAATGAGACCACTGTTGATTTCTGGACGCCAACATTTGGAGGCCCACTCATTGGCAGATAG 1398 0.4306 MAEEFQAGICGETWWNINPTRSVFPLMSSSSTCSVAANDHAANYSTWQTDFVDLKATRSCAEEINNINMVSDGSLGFVDAQKAQQSESVSGGTGGSILMDSTLQIMGFGLSSSNSSNWNQSLFGRPESNFHSVLEEETVIDSSNNSQIQKDWSPKNFSSAGGSQVSTIDGFKQMNQEFSLDEQSLNCVTSSTGGFPNSYGYPSTLIYEADPQPQSQNSLFTNPSAMSYSSTPTVYGTSSNELSPTWSKVSTSLMKPSMPKQQLSGLHFSNNTPFWNASAEALDDIRAGVFASSSQGQYQTPNFEEKKLSSPSSTLLSKLKREESPDTGKKSCSELPALKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTPYMKNGAPIQQYQGCENGKEAEGEKEDLRSRGLCLVPISSTFPVTNETTVDFWTPTFGGPLIGR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi817g00041 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 412 IPR036638 GO:0046983
Sebi817g00041 465 FunFam Transcription factor bHLH123 family 353 415 - -
Sebi817g00041 465 MobiDBLite consensus disorder prediction 141 164 - -
Sebi817g00041 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Sebi817g00041 465 MobiDBLite consensus disorder prediction 294 318 - -
Sebi817g00041 465 CDD bHLH_AtbHLH_like 349 400 IPR045239 -
Sebi817g00041 465 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 157 444 - -
Sebi817g00041 465 MobiDBLite consensus disorder prediction 294 349 - -
Sebi817g00041 465 MobiDBLite consensus disorder prediction 319 337 - -
Sebi817g00041 465 Gene3D - 353 412 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi817g00041 Sebi-Chr817 374209 376431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi817g00041 259 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 54.502 3.48e-58 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi817g00041 - - gmx:100794682 605.52