Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi817g00030 ATGGCTATGCACTTCCTTGACACCATCTCACCATCCCATTTCCTCAACTACTCTGAAGCTTTAAGCTCCAGTAACGGTTTCTTCCACCTTGGATTCTTCACCCCTCAAAACTCAACCTTTTCATACCTGGGAATTTGGTACATGTCCAAACCCCCTGTAGTATGGGTAGCTAATAGAGACCAACCACTGAATGATTCTTCTGGGACAGTCAAAATATCCGAGGATGGAAATCTTGTTCTAATGAATGGACAAAAAGAGATCCTGTGGTCAACAAATGTGTCCAACATTTCATCTAACACAACAGCTCTGCTTCTGGACACTGGTAATCTTGTTCTGCAAGAAAGTGCTACAGGAAAGATGGTATGGCAGAGTTTCCAACACCCTTGCAATACATTGTTGGATAAAATGAAACTTGTTTCGAATAAAACTAGAATGAAAATAACCTCATGGAAAAGTCCTCAGGATCCATCCATTGGTAACTTCTCTCTAAGTCTTGAACACCTAGAGATTCCTGAAGTTTTCACCTGGAGAGGAAGTCAACTATACTGGCGAAGTGGTCCATGGAATGCTCAAGCTGACAATAGGGATGGCTTTCTGAAGCTGCAGAATACCAAAGTTCCAGACTTTGTCCAATGGTCATCTTCCCTTTATGATGATTGTAGAACTCAGTGCTTGCAAAACTGCTCTTGTTTAGCATATGCGTATGATGCAGGCATTGGTTGTATGTTATGGAGTGGAGACTTGATTGACATACAGAGGTTCTCAGCTGGAGGAACTGATCTTTACATTCGGGTTCCCTATTCCGAACTTGATGAAAAGAAGAAGAGTGCCACAGTGATCATTGCAGTTACAGTCACAATAGGAACAATTATCATTTTGACATGTGGATATGTCTTGTGGAAAAGGAATACAAAAAGAGAGAAAATAAATCTGAAAATTCAGAGTCACAGAAGCCAGGTAAATGACCCTAGTAAATTTAAACTCCCGGAGCTTTCCCAATTTGAATTTGAAAAGATTGCTACTGCAACAAACAACTTTCACCTAAATAATAAGCTAGGGCAAGGTGGTTTTGGACCAGTATACAAGGGTACATTGGAAGATGGACAGGAAATAGCTGTTAAAAGACTTTCAAGAACATCTGGACAAGGGCTAGAAGAATTTATGAATGAGACTTGGTATGGCAAGGATTTTGGTCACAGTGAAGATGAGGCCAATACTAGAAGGGTTGTTGGAACATATGGTTATTTGTCTCCGGAATATGCCATGGAAGGACTATTTTCAGAGAAGTCTGATGTCTTTAGCTTTGGTGTTTTACTGCTGGAGATTGTCAGCAGGAGGAAAAACACCAGCTTTTATAAGGATGCTGAAACTTTGAGTCTTTTAGGATTTGCATGGAAGTTGTGGAATGAGGACAACATCACATCTCTAATAGATCCAGAAATATCAAATCAAAGCTTCCATGCAGATATTATTAGATGCATACATATTGGCCTTCTGTGTGTGCAGGAACTTGCAAGAGACAGGCCTACAATGACTACAGTAATTTCAATGCTTAGCAATGAGACTGTTTACCTTCCCACCCCAAGACGGCCAGCATTCATTCAAAGGCAGACCATGTTGGATGTAGAGTGCTCTCCTAAAAATGATGTATTGTGCTCCATCAATTATGTCAGTGTAACAAATTTTGAAGGAAGGTAG 1698 0.404 MAMHFLDTISPSHFLNYSEALSSSNGFFHLGFFTPQNSTFSYLGIWYMSKPPVVWVANRDQPLNDSSGTVKISEDGNLVLMNGQKEILWSTNVSNISSNTTALLLDTGNLVLQESATGKMVWQSFQHPCNTLLDKMKLVSNKTRMKITSWKSPQDPSIGNFSLSLEHLEIPEVFTWRGSQLYWRSGPWNAQADNRDGFLKLQNTKVPDFVQWSSSLYDDCRTQCLQNCSCLAYAYDAGIGCMLWSGDLIDIQRFSAGGTDLYIRVPYSELDEKKKSATVIIAVTVTIGTIIILTCGYVLWKRNTKREKINLKIQSHRSQVNDPSKFKLPELSQFEFEKIATATNNFHLNNKLGQGGFGPVYKGTLEDGQEIAVKRLSRTSGQGLEEFMNETWYGKDFGHSEDEANTRRVVGTYGYLSPEYAMEGLFSEKSDVFSFGVLLLEIVSRRKNTSFYKDAETLSLLGFAWKLWNEDNITSLIDPEISNQSFHADIIRCIHIGLLCVQELARDRPTMTTVISMLSNETVYLPTPRRPAFIQRQTMLDVECSPKNDVLCSINYVSVTNFEGR 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi817g00030 565 SMART blect_4 12 128 IPR001480 -
Sebi817g00030 565 SMART ntp_6 193 265 IPR003609 -
Sebi817g00030 565 Gene3D - 2 126 IPR036426 -
Sebi817g00030 565 CDD B_lectin 12 128 IPR001480 -
Sebi817g00030 565 SUPERFAMILY Protein kinase-like (PK-like) 331 540 IPR011009 -
Sebi817g00030 565 ProSiteProfiles Protein kinase domain profile. 346 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi817g00030 565 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 196 508 - -
Sebi817g00030 565 ProSiteProfiles PAN/Apple domain profile. 192 266 IPR003609 -
Sebi817g00030 565 Pfam PAN-like domain 194 251 IPR003609 -
Sebi817g00030 565 Pfam D-mannose binding lectin 53 151 IPR001480 -
Sebi817g00030 565 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 397 523 - -
Sebi817g00030 565 Pfam Protein tyrosine and serine/threonine kinase 408 517 IPR001245 GO:0004672|GO:0006468
Sebi817g00030 565 Gene3D Phosphorylase Kinase; domain 1 343 387 - -
Sebi817g00030 565 ProSiteProfiles Bulb-type lectin domain profile. 6 125 IPR001480 -
Sebi817g00030 565 SMART tyrkin_6 346 518 IPR020635 GO:0004713|GO:0006468
Sebi817g00030 565 Gene3D Transferase(Phosphotransferase) domain 1 388 525 - -
Sebi817g00030 565 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 125 - -
Sebi817g00030 565 CDD PAN_AP_plant 191 266 - -
Sebi817g00030 565 SUPERFAMILY alpha-D-mannose-specific plant lectins 43 189 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi817g00030 Sebi-Chr817 271437 274468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi817g00030 333 565 Receptor kinase-like Gene Family AT4G23280 40.909 1.32e-56 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi817g00030 PK_Tyr_Ser-Thr 8.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi817g00030 - - cam:101513672 403.675