Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi817g00011 ATGGCTTCCCGTTATGATTTAATCTGTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAGTGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTATTGGATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTCTGATTCTCAACAAGGTATTGAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGATTTTCTTGAAAGAGGAGTGTACAGATCAATTGCTGATTTGAAAGAAGTAACACAGAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAAATATTCTATTCAGCTTCGTGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAAACGGCATCGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGCAAGGGTGAGATGTATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGTGATGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAGAGAAGAATTAG 1548 0.3676 MASRYDLICNVNGGSEHKIWRIKVRVIRLWRSSYFKDNNNKPMIELVVLDEQGGRIQCTVKSIHVYLFENSINEGSVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLLDETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPWSVGVSNTTYNSKLFINANIPEIEDFQMRLKSSDSQQGIEFSQLSDHASLTLEEDFLERGVYRSIADLKEVTQNSVFVTIGTVKDIESEYNWCYRACKKCSLGLKLDGSMFYCKKCVTHYSTFVTKYSIQLRVVDETDSASFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDSFKDKKFLFKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVALIQDNSELLSQFTESSDLLKILQVPFYRLEKTASNMDSSVIKVLDVDLAEYCGNASFDTPSKCKGEMYSEQTIVRVAVHGDEQSAKKLRKVIKEEKN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi817g00011 515 SUPERFAMILY Nucleic acid-binding proteins 256 388 IPR012340 -
Sebi817g00011 515 PANTHER OS03G0429900 PROTEIN 19 387 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi817g00011 515 Pfam Domain of unknown function DUF223 45 113 IPR003871 -
Sebi817g00011 515 CDD RPA1_DBD_A_like 21 109 - -
Sebi817g00011 515 Gene3D - 246 408 IPR012340 -
Sebi817g00011 515 Pfam Replication factor-A C terminal domain 265 383 IPR013955 -
Sebi817g00011 515 SUPERFAMILY Nucleic acid-binding proteins 16 115 IPR012340 -
Sebi817g00011 515 Gene3D - 114 229 IPR012340 -
Sebi817g00011 515 Gene3D - 8 113 IPR012340 -
Sebi817g00011 515 CDD RPA1_DBD_C 253 383 IPR047192 -
Sebi817g00011 515 SUPERFAMILY Nucleic acid-binding proteins 126 219 IPR012340 -
Sebi817g00011 515 CDD RPA1_DBD_B_like 131 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi817g00011 Sebi-Chr817 96517 99062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi817g00011 20 348 Core DNA Replication Machinery Family AT2G06510 23.016 3.92e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi817g00011 - - adu:107477146 411.379