Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi817g00008 ATGGGGACAGAAGAATTTGCCGTGGACTATGACTACCTAATTATCGCCGTGGGCGCTAATGTTAATACATTTAATACACCAGGAGTGGTGGAGAATTGCCATTTTTTGAAGGAAGTTGAAGATGCTCAGAAGATTAGAAGAACAGTTATTGACTGCTTTGAGAGAGCTAATTTGCCTGATGTAAATGAAGAAGAGAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGACCAACTGGAGTGGAGTTTGCAGCCTCACTTCATGACTTTGTCAATGAGGATTTGGTCCGTTTATATCCCGGGATAAAAGATTTAGTTAAAATTACACTTCTGGAGGCCGGAGACCATATCTTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTTGGAAGAGATGGGATTGTTGTGAAAACAGGATCCATGGTTGTGAAGGTAGATGAGAAGGAAATTTCCACTAAAGAACTGAAAAATGGAGGAGAGATAACTAAAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGACACAAATTGGTCAGACTAGCAGGCGTGCTCTAGCTACTGATGAATGGTTGAGAGTTGAGGGATGCAACAATGTGTATGCTCTGGGTGATTGTGCTACCATAAACCAGCGAAAAGTCATGGAAGATATTACAGCGATCTTTAAGAAGGCTGACAAAGACCATTCTGGAACACTTACTGTCAAAGAATTTCAAGAGGTGATGGATGACATCTGTGAAAGATACCCTCAGGTGGAGCTATATCTGAAGAGTAAACAGATGCGTGACATTGCTGATTTGTTGAAGGAAGCCAAGGGAGATGTTAAAAAGGAATCAATTGAACTCAATATCGAAGAACTCAAAACAGCACTTTCCAAAGTGGATTCTCAGATGAAATTTCTTCCTGCTACAGCGCAGGTTGCATCTCAGCAAGGCACTTACCTGGCCAAATGTTTTAACCGGATGGACGAGTGTGAAAAAAGTCCTGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGTCATCGTTTCAAACCCTTCAGGTACAAGCACTTGGGTCAATTCGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGGGATTGGGTTTCAATTGGCCACAGCAGTCAATGGCTGTGGTATTCTGTGTATGCAAGCAAGCAAGTAAGCTGGCGTACAAGGGCGTTCGTAGTTACAGACTGGACAAGACGTTTTATTTTTGGGAGGGACTCAAGTCGCATTTGA 1293 0.4285 MGTEEFAVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPDVNEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVRLYPGIKDLVKITLLEAGDHILSMFDKRITAFAEDKFGRDGIVVKTGSMVVKVDEKEISTKELKNGGEITKIPYGMAVWSTGIGTRPFIKDFMTQIGQTSRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDITAIFKKADKDHSGTLTVKEFQEVMDDICERYPQVELYLKSKQMRDIADLLKEAKGDVKKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMDECEKSPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRAFVVTDWTRRFIFGRDSSRI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi817g00008 430 ProSitePatterns EF-hand calcium-binding domain. 241 253 IPR018247 -
Sebi817g00008 430 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 274 429 - -
Sebi817g00008 430 SUPERFAMILY EF-hand 221 317 IPR011992 -
Sebi817g00008 430 PRINTS FAD-dependent pyridine nucleotide reductase signature 71 89 - -
Sebi817g00008 430 PRINTS FAD-dependent pyridine nucleotide reductase signature 10 28 - -
Sebi817g00008 430 ProSiteProfiles EF-hand calcium-binding domain profile. 228 263 IPR002048 GO:0005509
Sebi817g00008 430 PANTHER NADH DEHYDROGENASE 4 430 IPR045024 GO:0003954|GO:0006116
Sebi817g00008 430 Coils Coil 292 312 - -
Sebi817g00008 430 Gene3D - 1 276 - -
Sebi817g00008 430 Gene3D - 277 429 - -
Sebi817g00008 430 SUPERFAMILY FAD/NAD(P)-binding domain 71 225 IPR036188 -
Sebi817g00008 430 Pfam EF hand 233 258 IPR002048 GO:0005509
Sebi817g00008 430 Pfam Pyridine nucleotide-disulphide oxidoreductase 4 232 IPR023753 GO:0016491
Sebi817g00008 430 SMART efh_1 232 260 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi817g00008 Sebi-Chr817 61870 64596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi817g00008 2 430 Chloroplast and Mitochondria Gene Families AT4G21490 78.140 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi817g00008 K03885 - gmx:100802661 806.208