Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi813g00005 ATGCTCATAGTGGAGCACTTGAGTGTAGTTGCCTGGAGTGTTGCATTACCTGGTATTGCTGATGCCAATAGCTGCTATTTTTCTCTCTCGTCTCTCCTAAACCCTAAATGCCCCAAAATCCCTTCAACCATGTCCATGAGCTCTTCTCAGGTAAAATTGTTCTTGTCTGAGGATTACCCCTCAAAAGTTGGCCAGAAATTGCCAGATCATCTTCAGGCAAAGATATCATCATCAACATTACATTCTAGTACTAATGAATCTGATGATTTGCCCCCTGGGTTTGAAGGCAGTCATTTCCTGAACCGACCGAAGGTTGAATTCTCCAACATTTCCCAGATAAAATGGGAACGTCCTCCCCGGCTTGTTTTCAGTTCTCACTGGCGTGTTGCAGCTGGTGAAGAAAGTAGGGAGAGAGAGGCTCAGAAGCTGAGAGAAATGAAAGTGCTTGAAGCAGTTTATCCCCGTATTTCTGCCATTCCTCCTAGCCCTTCTGTTTCTTTGGATGTAGAAGAGGAAGATTATGATGATAACACTACTCCTCTCGTCTCTATCATTCCCATTGAGGAGGAAGAGTCTATCAATTCCATAACATTACCCCACAATGTGCAGTCACAGAACTTGCAGCAATATATATCAGCAATGACTCCAATTAGTTCAGACTGCAACACCTCCCATACTGTTTCCTTTGATGCCTGTGGAGCGCTCTTATCTGGGGGGGTATCTCTTGGTTCGGAAGCAGACTTAGCAGCAGCTTCAGCTGTTGTAGCAGCCATCGTGAAGAGTAATGAGGAAGGGAGGTTAATAGATATGGATCTACTGGTTGAAATATTTAATGACCCAAAAATGATTGAGAAATTGACTAAAGAAAATAGAATTGCAACCACCACTGTAAGTGCATCCTCAAAAACTGTGGATATACCCTCTTCTGGATCAAAACCTGCTATTCCACCAGTTCCATTGTTGAATCCTACACCTGATAAGCCAGCAACTGCATCAGTTCCATTGTCTAGGCCTGTGTCTGGTAAACCAGTATCTCCCTCAGTTTTTCTGCCTACTGCTACACCTGCACCTCATATGCTGAGGTCTGTCAACAATAATATTCACCATGTATCAAATGGAATACCAACTGCTTTAAATACCCAGCCTCGGCAAGATACAGTTATGGCATCCGGAATGAAGCGAGCTGCATCATTGCCCTCCATAGCTTCTAGTGAGCTAAGCTCTGTTACATTGCCTTCTGCTACTGGGAACTTGCACACTGTTGTGAATCAGGGGCAATCCACTGCTAGTACAATGCCTTACCAACTAAACACAGGTTCAGAATGTGCTGTAAAGGATGCCAACTATTATAAAAACCTCGTTAGGCAACATGGTGCAGATAAGCAGGACTCACAAATAGGTATCCGTCATAGTAACTTCCAAGATTTGAAACCAGTACATAACATTAACAAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATACTTTAAAAGCTCAAGGGGGTGCCGAAATGGTAACAATTGCCCCTATCAGCATGATGTATCAGTTCACAGGGGAGCTGAACTTGGAAACAGAGAGGAGGATGAAAGGAGACGGAGTGAGGAAGAGTGGGATATCAGTTTTATAGGTTTACCAATTTCTCTGGTTGTGCTTGGAATTGGTGGCCGGATTTTGATATGA 1686 0.4342 MLIVEHLSVVAWSVALPGIADANSCYFSLSSLLNPKCPKIPSTMSMSSSQVKLFLSEDYPSKVGQKLPDHLQAKISSSTLHSSTNESDDLPPGFEGSHFLNRPKVEFSNISQIKWERPPRLVFSSHWRVAAGEESREREAQKLREMKVLEAVYPRISAIPPSPSVSLDVEEEDYDDNTTPLVSIIPIEEEESINSITLPHNVQSQNLQQYISAMTPISSDCNTSHTVSFDACGALLSGGVSLGSEADLAAASAVVAAIVKSNEEGRLIDMDLLVEIFNDPKMIEKLTKENRIATTTVSASSKTVDIPSSGSKPAIPPVPLLNPTPDKPATASVPLSRPVSGKPVSPSVFLPTATPAPHMLRSVNNNIHHVSNGIPTALNTQPRQDTVMASGMKRAASLPSIASSELSSVTLPSATGNLHTVVNQGQSTASTMPYQLNTGSECAVKDANYYKNLVRQHGADKQDSQIGIRHSNFQDLKPVHNINKGEVKHKIQKPCIYFKSSRGCRNGNNCPYQHDVSVHRGAELGNREEDERRRSEEEWDISFIGLPISLVVLGIGGRILI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi813g00005 561 ProSiteProfiles Zinc finger C3H1-type profile. 490 517 IPR000571 GO:0046872
Sebi813g00005 561 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 47 527 - -
Sebi813g00005 561 MobiDBLite consensus disorder prediction 296 343 - -
Sebi813g00005 561 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi813g00005 Sebi-Chr813 114627 116931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi813g00005 112 182 Homeobox Transcription Factor Family AT4G02560 39.437 2.48e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi813g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi813g00005 - - gmx:102661587 565.844