Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi812g00013 ATGGGTGTTGCAGCTGCTGGCAACTTATATTATTCTGGCATGAATCCTTCTTCTGGTACTGCTGTATTCCCTCCGCCTTCAAGCACATTTGGACTCACTGGAGTTCTTCAGATAATTTTGGAAGAAGCACTGGTTTCATGGATGATGTCAGAGGTCCATACAAAACACTTTCCACCAGCTGCTCCTCCCTGGTTGGACCAGCAGTTGAATAATAATAACAATGATGGCCATCCTACAGCCTGGAATCAATCTCTTCCAATGCCTTATATACAAGTCTGTGATTCTCTCCCTGTTATTCCCAGTCCCAATGTAAATGGAAGTTCATTAGAGAGTCCAAGTATGGGTTTGCAAAGATATCATGATACATCTGCAACAGAAATGGCCTCAGCACTTCCTATGCAAGGAGTAAGAGGTCACAATATCAACTTTTACCCTCCAATAACTGCAACTTCATTTAGAGTTCCAACCAATCCTTCACGTGGTGCTGCAATCCCCACACAGACTGGTTTTGAGATGGGTCCTAGGCATGTTGGCCCTGCACCACCAGCAGGCTTCCGGGTTTACCGACCTAATAGAGGAGTCATGCATGGGACAGCTCTTGGACATCGAAGTCTCCCCCCTGTGGGCTTCGTTCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGGAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGCAACGGATTGGCAATGTAAGCACTGGTTTATCAGAGGAAACAATCACAACTCAATTGAAGACAAAACTTATTTAACACCTGCTGCTGCTATTAATGTGGAGGAGGCAGCTTCTGATGATCAGGAAACTGATTCTTGTATAATATGTCAGGATGAATTTAAGGACCAAGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCATGCAGATTGCTTAAAGAAATGGTTGCTTGTAAAAAATGTCTGCCCCATATGCAAATCAGAAGCTTTGACTACTGGAGGGAGGGATGCATAG 1023 0.437 MGVAAAGNLYYSGMNPSSGTAVFPPPSSTFGLTGVLQIILEEALVSWMMSEVHTKHFPPAAPPWLDQQLNNNNNDGHPTAWNQSLPMPYIQVCDSLPVIPSPNVNGSSLESPSMGLQRYHDTSATEMASALPMQGVRGHNINFYPPITATSFRVPTNPSRGAAIPTQTGFEMGPRHVGPAPPAGFRVYRPNRGVMHGTALGHRSLPPVGFVQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEATDWQCKHWFIRGNNHNSIEDKTYLTPAAAINVEEAASDDQETDSCIICQDEFKDQEKIGVLRCEHEYHADCLKKWLLVKNVCPICKSEALTTGGRDA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi812g00013 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 48 333 IPR045191 GO:0061630
Sebi812g00013 340 SMART ring_2 288 328 IPR001841 -
Sebi812g00013 340 ProSiteProfiles Zinc finger RING-type profile. 288 329 IPR001841 -
Sebi812g00013 340 Pfam Ring finger domain 286 329 IPR001841 -
Sebi812g00013 340 CDD RING-H2_RNF24-like 286 332 - -
Sebi812g00013 340 SUPERFAMILY RING/U-box 281 333 - -
Sebi812g00013 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 335 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi812g00013 Sebi-Chr812 319034 321094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi812g00013 192 335 C3H Transcription Factor Family AT2G15530 31.847 2.40e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi812g00013 K19041 - gmx:100800642 355.14