Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi811g00025 ATGGGAGGAGGAGAACAGTCCTTGGCACCACTCCCATTTGACAGAACTCTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTAAAGTGTGGTCGCAGAGGAAAGCCAAAGCTTTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATTTGGTACTCAGGCCAGCAGGAAAAACATTTGCGATTGAGTGCAGTTACAAAAATTATTCAAGGGCAGGGAAATATAAGGTCCCAGAGGCAAAATGAACCTGAAAAGGAGTGTCATTCATTTTCACTAATCTATGCTAATGGAGAACGATCTCTTGATCTGATATGCAAGGACAAAGCACAGGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCAAGGTGCCAGCATCCTAGAACTTTTAGTAGTTTAAGAAGTTGTAAAGGGGTGCAAAGTTGTGTCAGTAGTCCAGCTGGAATATTAAGAAGAAAGAAAAATCTTGGCCTTCTGGATGATAACTCTCAATTTACTCAGGTACATAGCGTATGTGCAAGTCCTACTTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGCTTGTCATATACATCTGATAACATTTATTCATCTGCATCTTTCCTCTCCAGCACTCATGGCATAACAGATTCAGTCCCAAGTTCTCCATATATTGATTCAGATATTCATAGAAAGATTGAGTCAACACGTGTTGACAAGGAACACAAGAATTTGTCCTACAGGTCTCTGATGCCTCCTACCTCCCCACATGTAGGAAATAACAATGTATTAAAAGATGTAATGATATGGGGTGGAGGGATTGGATGTCTTGTAGGGATTGTAAATGAAAGGTTTGTCCAAAATGGAATTTATTCTTTAGTGCCAAAGTTACTGGAATCCACTGCAATGTTAGATGTACAAAATATAGCCTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTCTGCTGGGGACAAGGGAAATGGGGAAGGCTGGGGCAAAAAATTGATATGGACATTAGCTCTCCCAAAGTAGTTGATTCTCTTAGTGGTATTCATGTAAAACATGTTGCTTGTGGTGAGTATCATACAAGTGCTTTGACAGATTCTGGTGAAGTATATACATGGGGGAATGATGTTTGTTGTTCAGATTTAGTTGATGAAGGTAGAATTAGAAGTCAGTGGATACCACATAAACTTTCTGGACCTTTAGATGGTATTAGTATTTCAAGTGTTGCTTGTGGGGAATGGCACACTGCACTTGTCTCTAGCTGTGGACGGTTATTTACATATGGAGATGGTACATTTGGAGTACTAGGTCATGGGGATCTTCGGAGCTCTTCTAGACCAAAAGAAGTTGAATCTCTTAGTGGTCTAATGGTGAGGTCTGTTGCTTGTGGATCATGGCACACGGCTGCTATTGTTGAAGTCATGTTTGATCGTTTTAGGTACAATACTCCTACTGGTAAGCTTTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGAAGCAAGCTTGTACCAACATGTGTTGCACAACTTGTTGACTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAACATGGGGAAGGTTTTTGCAATGGGAAGTGCTAAATATGGACAGCTTGGAAATCCACATGCAAGGGATAAAGCAGTTATGGTTGAAGGACAACTTAAGCAAGAGTTTGTTAAAGTGATATCATCTGGTTCATATCATGTTGCTGTTTTGACATCTGCAGGGAGTGTGTATACATGGGGCAAAGGTGAAAATGGGCAATTGGGGCTAGGTGATACTGAAGACAGACATGTACCTTGTTTTGTTGAGGCTCTAAGAGACAGGCAGGTAGATACTATCACTTGTGGTCCAAGCTTCACAGCTGCAATATGTTTGCACAGACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGAAAGAAACATAACTGTTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAAAAGGTTATAAATGCATCTCTAGCCCCAAGTAAGAGCAAGGCCTTTCGGGTTTGTGATCAGTGCTTTGAAAGACAACAAGGAAGTACACATTCAGCTATGTCATCAAAGTCTAGAAATTACAATACTCAGCAGATATTGAAGCATCAAAACAAGATTGGTGATCTCACTGAAGATAGGGGAGAAACAACTGTGACACAAGGTCCTCTATTGTCTCTCAGTCAATCATGTTACAGGAAAAGCATGCCTAGTGGAAGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCATGATTTAGAAGATGGTTCTTATAGGTTAGGTGGAATGCCACAATGTGGGAAAGTTCCCTGCCCTGTCCTATTTAAAAACAATAGTACAGAAAATTCAGCTGTGCATGTTTCTTCATCCAAAAATAAATTAGCTTCTGTTTCACCACTGAATGTAGAATCTACAGAATACAACTTCCCCAATGCAGAGACAGATACAATAAAGTCTGAGAAGATGCTCATAGAAGAAGTTCAGAAGCTGAGAGCTGAGGCTAAAAGACTTGAAGAGCAGTGTGAGCTCAAGAACAACAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGAGTGTAGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCTAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACAGTAACAGGAAAAGATAATGCTGGACAAGAAGGAAAGGTTGGGATACCTGAATTTCTTCCTAATTTGGCACCCATACATACAACAGATATGAATAGTCCAAGAGATGGAAACATGGACAGTCTATCCAATTCCCCTATAGTATTCTCTGACACTTTCAAATCCAAATTTGGGAAAAGTATGTTCCTAAAAAATGATAGATTGATGGAGAATTCTAACTTCACTAGAGCAGAACCTCAACAAGACACTGCAGATAGTTTGAAGGCGGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTTACAACCTTGCCATGTGGTAAAAAGGGCCTTAAGAGAGTGAGATTTAGCCGGAAGCGGTTCTCACAGAAGGAAGCTGAAAGATGGTGGGAAGAGAATCAAGGCACAGTGTACAACAGGTATGAGATTGAAGGATATATGAACACTAGCCAAGGTCAGGTGAAAGGCTAA 3222 0.4053 MGGGEQSLAPLPFDRTLEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSAVTKIIQGQGNIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRTFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDNSQFTQVHSVCASPTLSLSERCFSDGLSYTSDNIYSSASFLSSTHGITDSVPSSPYIDSDIHRKIESTRVDKEHKNLSYRSLMPPTSPHVGNNNVLKDVMIWGGGIGCLVGIVNERFVQNGIYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKVVDSLSGIHVKHVACGEYHTSALTDSGEVYTWGNDVCCSDLVDEGRIRSQWIPHKLSGPLDGISISSVACGEWHTALVSSCGRLFTYGDGTFGVLGHGDLRSSSRPKEVESLSGLMVRSVACGSWHTAAIVEVMFDRFRYNTPTGKLFTWGDGDEGRLGHADNGSKLVPTCVAQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHARDKAVMVEGQLKQEFVKVISSGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRHVPCFVEALRDRQVDTITCGPSFTAAICLHRPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKVINASLAPSKSKAFRVCDQCFERQQGSTHSAMSSKSRNYNTQQILKHQNKIGDLTEDRGETTVTQGPLLSLSQSCYRKSMPSGRKDWKNQQESQHDLEDGSYRLGGMPQCGKVPCPVLFKNNSTENSAVHVSSSKNKLASVSPLNVESTEYNFPNAETDTIKSEKMLIEEVQKLRAEAKRLEEQCELKNNKIQECQQKIEESWSVAREEAAKCKAAKEVIKALALRLHTVTGKDNAGQEGKVGIPEFLPNLAPIHTTDMNSPRDGNMDSLSNSPIVFSDTFKSKFGKSMFLKNDRLMENSNFTRAEPQQDTADSLKAEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSQKEAERWWEENQGTVYNRYEIEGYMNTSQGQVKG 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi811g00025 1073 Pfam Transcription factor regulating root and shoot growth via Pin3 1003 1058 IPR013591 -
Sebi811g00025 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 594 645 IPR000408 -
Sebi811g00025 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 373 427 IPR000408 -
Sebi811g00025 1073 Gene3D - 487 652 IPR009091 -
Sebi811g00025 1073 Pfam FYVE zinc finger 652 710 IPR000306 GO:0046872
Sebi811g00025 1073 Gene3D - 16 133 IPR011993 -
Sebi811g00025 1073 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 723 IPR013083 -
Sebi811g00025 1073 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 61 913 - -
Sebi811g00025 1073 PRINTS Chromosome condensation regulator RCC1 signature 414 430 IPR000408 -
Sebi811g00025 1073 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Sebi811g00025 1073 PRINTS Chromosome condensation regulator RCC1 signature 430 444 IPR000408 -
Sebi811g00025 1073 PRINTS Chromosome condensation regulator RCC1 signature 304 317 IPR000408 -
Sebi811g00025 1073 PRINTS Chromosome condensation regulator RCC1 signature 532 550 IPR000408 -
Sebi811g00025 1073 PRINTS Chromosome condensation regulator RCC1 signature 589 610 IPR000408 -
Sebi811g00025 1073 PRINTS Chromosome condensation regulator RCC1 signature 373 389 IPR000408 -
Sebi811g00025 1073 CDD PH_PLC_plant-like 15 127 - -
Sebi811g00025 1073 SMART fyve_4 644 713 IPR000306 GO:0046872
Sebi811g00025 1073 Coils Coil 851 885 - -
Sebi811g00025 1073 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 466 476 IPR000408 -
Sebi811g00025 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 491 542 IPR000408 -
Sebi811g00025 1073 SUPERFAMILY RCC1/BLIP-II 263 646 IPR009091 -
Sebi811g00025 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 321 372 IPR000408 -
Sebi811g00025 1073 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 650 712 IPR017455 -
Sebi811g00025 1073 SUPERFAMILY PH domain-like 16 126 - -
Sebi811g00025 1073 ProSiteProfiles BRX domain profile. 1004 1059 IPR013591 -
Sebi811g00025 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 321 369 IPR000408 -
Sebi811g00025 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 491 539 IPR000408 -
Sebi811g00025 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 428 476 IPR000408 -
Sebi811g00025 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 594 642 IPR000408 -
Sebi811g00025 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 372 423 IPR000408 -
Sebi811g00025 1073 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Sebi811g00025 1073 SUPERFAMILY FYVE/PHD zinc finger 649 727 IPR011011 -
Sebi811g00025 1073 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 414 424 IPR000408 -
Sebi811g00025 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 593 IPR000408 -
Sebi811g00025 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 428 479 IPR000408 -
Sebi811g00025 1073 Gene3D - 255 385 IPR009091 -
Sebi811g00025 1073 Gene3D - 386 480 IPR009091 -
Sebi811g00025 1073 CDD FYVE_like_SF 655 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi811g00025 Sebi-Chr811 392327 399907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi811g00025 1000 1063 Major Intrinsic Protein MIP AT1G31880 45.312 7.91e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi811g00025 - - gmx:100797223 1854.34