Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi811g00021 ATGTCACTTGATGAGTTGATCTCCATTTCCATAACACTAACACTTGCTATTCTATTCACACTCACTTCACCAACTACCTCTCTTTACTCTTCTCCATCTCCTCCAGCCGCCCCATTCTTCGAATCTTCCCCTCAATCTTCTTCCTCTTCTCCCATCGCCGTCGACGAATGGCTACACGCCACTGCCACCTACTACGCCGCCGCCAACCCCAGGGACTCCGTGGGCGGCGCGTGCGGCTACGGCGACCTTATGAGGGACGGTTACGGCTTTGCCACTGCAGGCCTCAGTGAGGCCCTCTACGGCCGCGGCCAGATCTGCGGCGCGTGCTTCGAGCTCCGCTGCCTTGAGGAGGAAACCTCCTTCGACCGCCGCTGGTGCATCGCCGGCACCTCCATTACCGTCACCGTCACCAATTTCTGCGCGCCTAATTACGGATTCGACGCCGATAGTGACGGCGGACATTGCAACCCTCCCAAGCAGCACTTCGTGCTCCCTATCGAAGCTTTTGAGAAGATCGCGATTTGGAAAGCTGGTAACATGCCCGTCGAGTATCGCAGGATAAAGTGCAGAAGGGATGGGGGAATCCGGTTTACGATTACTGGTTCTGGTATCTTCATTTCGGTGTTGATCAGTAATGTGGCTGGCATTGGGGATATTGTTGGTGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTCCCATGGGTCGGAATTGGGGTCAAAATTGGCATGTAAATGCGTTACTGCAAAATCAGCCTCTTTCATTTGAGGTTACTGGTAGTGATGGGATAACGGTTACATCTTACAATGTTGCTCCCAAGAGTTGGAGCTTTGGACAAACCTTTGAGGGCAAGCAATTCGAGTCTTAA 867 0.526 MSLDELISISITLTLAILFTLTSPTTSLYSSPSPPAAPFFESSPQSSSSSPIAVDEWLHATATYYAAANPRDSVGGACGYGDLMRDGYGFATAGLSEALYGRGQICGACFELRCLEEETSFDRRWCIAGTSITVTVTNFCAPNYGFDADSDGGHCNPPKQHFVLPIEAFEKIAIWKAGNMPVEYRRIKCRRDGGIRFTITGSGIFISVLISNVAGIGDIVGVKVKGSKTGWLPMGRNWGQNWHVNALLQNQPLSFEVTGSDGITVTSYNVAPKSWSFGQTFEGKQFES 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi811g00021 288 Pfam Expansin C-terminal domain 195 272 IPR007117 -
Sebi811g00021 288 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 75 194 IPR007112 -
Sebi811g00021 288 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 204 283 IPR007117 -
Sebi811g00021 288 SMART dpbb_1 92 184 IPR007112 -
Sebi811g00021 288 PRINTS Expansin signature 152 169 IPR002963 GO:0009664
Sebi811g00021 288 PRINTS Expansin signature 169 182 IPR002963 GO:0009664
Sebi811g00021 288 PRINTS Expansin signature 87 101 IPR002963 GO:0009664
Sebi811g00021 288 PRINTS Expansin signature 193 205 IPR002963 GO:0009664
Sebi811g00021 288 PRINTS Expansin signature 269 285 IPR002963 GO:0009664
Sebi811g00021 288 PRINTS Expansin signature 240 261 IPR002963 GO:0009664
Sebi811g00021 288 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Sebi811g00021 288 CDD DPBB_EXPA_N 69 189 - -
Sebi811g00021 288 SUPERFAMILY Barwin-like endoglucanases 50 212 IPR036908 -
Sebi811g00021 288 Gene3D - 195 286 IPR036749 -
Sebi811g00021 288 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Sebi811g00021 288 PRINTS Expansin/Lol pI family signature 56 71 IPR007118 GO:0005576
Sebi811g00021 288 PRINTS Expansin/Lol pI family signature 177 193 IPR007118 GO:0005576
Sebi811g00021 288 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Sebi811g00021 288 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576
Sebi811g00021 288 PRINTS Expansin/Lol pI family signature 269 283 IPR007118 GO:0005576
Sebi811g00021 288 SUPERFAMILY PHL pollen allergen 191 283 IPR036749 -
Sebi811g00021 288 Gene3D - 41 190 IPR036908 -
Sebi811g00021 288 PANTHER EXPANSIN-A15 13 286 IPR002963 GO:0009664
Sebi811g00021 288 Pfam Lytic transglycolase 93 184 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi811g00021 Sebi-Chr811 294159 296029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi811g00021 56 288 Expansin Gene Family AT3G03220 75.536 3.00e-133 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi811g00021 - - tpra:123916217 404.831