Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi810g00013 ATGGACATTACATCTTGTACCAAAGGTTTCAACTCTTCTAATTCTTCTATTTTTTCTTCACATAAGTACACTTTTGCTGTATTTGGTGACTTGAAGATCTCTGAGTTAGAGGATTCATGCAGCATACTTGTCATGGCTATGATTTCAAATTTAAGCAGAGGTGATCTGAACCTTTCATATGGGAATATCCACCAGCAACTGGTTTATGGGGTGGAGCTTTCTTGGCATGATATATTCTGCCAAGAGTGTGAAGGCAGGGGCTACTGTCCTCACAAAATTGGCCTCATCATTGGACTAATTCTTCTCATAAGAATCATAGGTGGGACATCAAAAAGATCACCAAAGGATTCAAGCATAAACTTGGTGAGGGGAGGCTATGGCTCTGTTTACAAAGGAAGGCTTCGCAATGGAGGTTTAGTAGCAATCAAGATTCTAGGTGGCAAATCCAAAGCTAATGGTCAAGAATTTATCAATGAAGTTGCTACCATTGGAACAATCCATCATGTTAATGTTGTGCACCTTATTGGCTTCTGTGTTGAGAAAACAAAAAGAGCTCTTGTCTATGAGTTCATGCCTAATGGATCCCTTGACAAGCACATTTTCTTAAGAGAAGGAAAGATCCCATTAAGTTGGGAGAAAATGTTTGAGATTGCACTTGGAGTGGCTCGTGGTATTGAATATCTGCATAGAGGGTGTGACATGAGGATTTTGCATTTTGACATAAAGCCTCACAATATTCTTCTTGATGAGAATTTCACTCCAAAGGTTTCAGATTTTGGGTTGGCAAAGTTGTATCCAACTGATAACAGCATAGTGTCTCTGACAGCTGCAAGAGGAACCATGGGCTACATGGCACCAGAGTTGTTCTATAAGAACATTGGAGGGGTCTCATATAAAGCTGATGTTTATAGCTTTGGAATGTTGCTAATGGAAATGGCAAGTAGGAGAAAGAATATGAATGAGCATGCAGACCGTTCTAGCCAAGTTTATTTCCCTTCTTGGGTTTACGACCAGTTTAGTGAAGGGAAGGAAATAGAAATGGAGAATACTACAGAAGAGGATAAGAAAATATTGAAGAAGATGATCATAGTTGCATTGTGGTGTATACAGATGAAACCCTGTGATCGCCCTTCAATGAATAAAGTGGTTGAGTTGCTTGAAGGGGATGTTGAGTCATTGCAAATGCCTCCCAAGCCGTTTCAAACTCCAAAGGGGATGCCAGTAGGCATTGGAATGTTCAGAAATCTACCTTGGTTGCCACCTGGGAATTCTTCAAATTCACTTACCATAGTTGTAAATGGTCGTCACTAA 1311 0.4012 MDITSCTKGFNSSNSSIFSSHKYTFAVFGDLKISELEDSCSILVMAMISNLSRGDLNLSYGNIHQQLVYGVELSWHDIFCQECEGRGYCPHKIGLIIGLILLIRIIGGTSKRSPKDSSINLVRGGYGSVYKGRLRNGGLVAIKILGGKSKANGQEFINEVATIGTIHHVNVVHLIGFCVEKTKRALVYEFMPNGSLDKHIFLREGKIPLSWEKMFEIALGVARGIEYLHRGCDMRILHFDIKPHNILLDENFTPKVSDFGLAKLYPTDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRKNMNEHADRSSQVYFPSWVYDQFSEGKEIEMENTTEEDKKILKKMIIVALWCIQMKPCDRPSMNKVVELLEGDVESLQMPPKPFQTPKGMPVGIGMFRNLPWLPPGNSSNSLTIVVNGRH 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi810g00013 436 Pfam Protein kinase domain 123 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi810g00013 436 PANTHER RUST RESISTANCE KINASE LR10-RELATED 119 402 IPR045874 GO:0004672
Sebi810g00013 436 Gene3D Phosphorylase Kinase; domain 1 121 191 - -
Sebi810g00013 436 FunFam PR5-like receptor kinase 191 398 - -
Sebi810g00013 436 SUPERFAMILY Protein kinase-like (PK-like) 123 386 IPR011009 -
Sebi810g00013 436 Gene3D Transferase(Phosphotransferase) domain 1 192 401 - -
Sebi810g00013 436 ProSiteProfiles Protein kinase domain profile. 115 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi810g00013 436 CDD STKc_IRAK 123 388 - -
Sebi810g00013 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Sebi810g00013 436 SMART serkin_6 115 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi810g00013 Sebi-Chr810 181215 183659 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi810g00013 121 400 Receptor kinase-like Gene Family AT5G38280 53.333 5.03e-103 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Sebi810g00013 Pkinase 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi810g00013 - - cam:101507916 569.311