Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi810g00002 GTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACATGCTGGCAAGAAGCCTGTCGAAGCAATATAATGTGTAACAAGGCTGATATGTATTGTAACAACCAATGGGGAGGGTTGAGCAAAATTTCAACATTCCTGAATGCTTCTTGCCCAATAAACGACGAAGATAAAAAGCTCTTTGATTTTGGAATATTCCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCTAGAGACTTTCCTCAAAAATTCTTTTACTGTTTTTGGTGGGGCCTAAAAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACGGATGTTTGGGAAATCTGTTTTGCAGTTTTCATTTCCATATCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGACGTATTTGCAGTCAACAACAACAAGGTTGGAGGAGATGAGAGTAAAAAGGAGGGATGCAGAACAGTGGATGTCTCATCGATTGCTTCCTGATAGCCTGAGAGAAAGAATCAGACGATATGAACAGTACAAATGGCAAGAAACTAGAGGTGTAGATGAAGACAATTTGATTCATAATCTTCCCAAGGATTTAAGAAGGGATATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATGTTCGAGAAAATGGATGAGCAACTTTTGGATGCTATGTGTGACCGACTCAAGCCAGTGCTTTACACAGAAGAAAGCTACATTGTCCGTGAAGGAGACCCTGTTGATGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACTATGACAACTAATGGTGGAAGAACTGGCTTCTTCAACTCTGAGTACCTCAAGGCTGGTGATTTCTGTGGAGAGGAGCTTCTGACATGGGCTTTAGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACTGTCCAGACCCTTTCTGAAGTTGAAGCCTTCGCACTGAAAGCTGATGATCTGAAATTCGTGGCGTCTCAGTTCCGGCGCCTCCACAGCAAGCAGTTGCGCCACACTTTCAGGTTCTACTCACAGCAATGGCGCACGTGGGCTGCGTGTTTCATACAAGCAGCCTGGCGGCGCTACAGTAGGAAGAAGCTTGAAGAGTCACTTGTTGAAGAGGAGAATAGACTGCAAGATGCATTGGCAAAGGCTGGTGGTAGCTCACCAAGTCTTGGTGCCACAATATATGCTTCAAGGTTTGCTGCCAATGCACTCAGATTATTGCGTCGTAGCGGCACCAGGAAGACAAGGGTGCCGGAGAGAATACCCCCTATGCTGCTTCAGAAGCCTGCAGAACCTGACTTTACTGATGAAGAGCAATAG 1341 0.4444 VIGAFWYLFSIERETTCWQEACRSNIMCNKADMYCNNQWGGLSKISTFLNASCPINDEDKKLFDFGIFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTDVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYEQYKWQETRGVDEDNLIHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSRKKLEESLVEEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRSGTRKTRVPERIPPMLLQKPAEPDFTDEEQ 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi810g00002 446 Gene3D Helix hairpin bin 143 208 - -
Sebi810g00002 446 ProSiteProfiles cAMP/cGMP binding motif profile. 217 301 IPR000595 -
Sebi810g00002 446 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 441 - -
Sebi810g00002 446 FunFam Cyclic nucleotide-gated ion channel 1 215 333 - -
Sebi810g00002 446 SUPERFAMILY Voltage-gated potassium channels 79 139 - -
Sebi810g00002 446 SMART cnmp_10 217 348 IPR000595 -
Sebi810g00002 446 FunFam Cyclic nucleotide-gated ion channel 1 144 208 - -
Sebi810g00002 446 SUPERFAMILY cAMP-binding domain-like 146 339 IPR018490 -
Sebi810g00002 446 Gene3D Jelly Rolls 215 335 IPR014710 -
Sebi810g00002 446 Pfam Cyclic nucleotide-binding domain 237 328 IPR000595 -
Sebi810g00002 446 Coils Coil 369 389 - -
Sebi810g00002 446 CDD CAP_ED 217 348 IPR000595 -
Sebi810g00002 446 Pfam Ion transport protein 2 144 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi810g00002 446 MobiDBLite consensus disorder prediction 419 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi810g00002 Sebi-Chr810 13697 17479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi810g00002 1 445 Ion Channels AT5G53130 84.375 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi810g00002 K05391 - gmx:100801032 835.869