Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi80g00067 ATGGCTTCGCAGCCCAACGATTCTTCCCCGGCACCTGCTAAAAGCCGCGAAACTCACGGTTTGGTACCGGTGACAGTGAAACAGATAAGTGAAGCTTCTCAGTCCGGTGATGAAAAATCGAGTTTTGTGATCAACGGTGTAGATCTGACCAATGTAACTTTGGTTGGAATGGTGTTCGAGAAAACTGAGAGGAACACCGATGTTAATTTTGTTATAGATGATGGAACAGGACGAATCAAATGTCGAAGATGGGTCAATGAGACTTTTGACACAAAGGAAATGGAAGAAATAATGAATGGCATGTATGTTCGTGTTTATGGGCATTTGAAAACCTTTCAAGGTGTAAAGCAACTTGTTGCCTTCTCTGTCAGGCTTGTGACAAATTTTGATGAGGTCTCTTTTCACTTTATTGATTGCATACATAACCACCTCCGCTCCAAAGTAAAGATGGAAGGAAACACTTCCTTGCATCCTCCTCCTTCAGACTCATCTTTGAACACTCCTGTCAGAAGTGCATCACACGGATCTCAGGCACCATCATCAAATCCTGGATATGCACAATATAGCGTGGATGGACTCAAGGATTGTGATAAATTGGTTATTGACTATCTGAAGCAGCATTCAGACATGTCAGATGAACGGGGAATACATGTTAATGAACTATCTCGAGAACTCAAGCTTCCATTGGACAAGATCATGTTGTCACTGAAGACTCTTGGAGATGATGCTGAGGATCGTGCTGGATACACCGCTGCTATTGGTGTTGGTCTATTACTCTAA 780 0.4269 MASQPNDSSPAPAKSRETHGLVPVTVKQISEASQSGDEKSSFVINGVDLTNVTLVGMVFEKTERNTDVNFVIDDGTGRIKCRRWVNETFDTKEMEEIMNGMYVRVYGHLKTFQGVKQLVAFSVRLVTNFDEVSFHFIDCIHNHLRSKVKMEGNTSLHPPPSDSSLNTPVRSASHGSQAPSSNPGYAQYSVDGLKDCDKLVIDYLKQHSDMSDERGIHVNELSRELKLPLDKIMLSLKTLGDDAEDRAGYTAAIGVGLLL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi80g00067 259 PIRSF RPA32 1 243 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi80g00067 259 Gene3D - 13 147 IPR012340 -
Sebi80g00067 259 Gene3D - 187 243 IPR036388 -
Sebi80g00067 259 Pfam OB-fold nucleic acid binding domain 52 125 IPR004365 GO:0003676
Sebi80g00067 259 MobiDBLite consensus disorder prediction 151 184 - -
Sebi80g00067 259 PANTHER REPLICATION PROTEIN A-RELATED 6 242 IPR040260 -
Sebi80g00067 259 MobiDBLite consensus disorder prediction 1 22 - -
Sebi80g00067 259 MobiDBLite consensus disorder prediction 156 184 - -
Sebi80g00067 259 FunFam replication protein A 32 kDa subunit A-like 14 148 - -
Sebi80g00067 259 CDD RPA2_DBD_D 51 144 - -
Sebi80g00067 259 Pfam Replication protein A C terminal 170 239 IPR014892 -
Sebi80g00067 259 SUPERFAMILY Nucleic acid-binding proteins 21 145 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi80g00067 Sebi-Chr80 2024507 2028719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi80g00067 1 243 Core DNA Replication Machinery Family AT2G24490 46.032 1.66e-72 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi80g00067 K10739 - gmx:100802512 398.282