Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi80g00042 ATGGATGAATATTCTGGTAAAAGAGGCATTGATGGGGTGGTAGTCCCTAGAAAAGGGATGGGCCTTGAGTTTAGAAATACTGCTAATACTAGAGATCGAAATGGTCAAATTTGCAGGCAACTGGGTTGCAGTAGTAAAGCAAACTCTTCTAAAGATGCTCATGTCAGATCTTCAGAAAAAGGTAAGTCTTTGAGGACTTCTTCAAGTGGCAAGGAGGCAATTGGAAGTTCCTCTAGAATGACTAGTAATCCAGGAAAACCCCTTATGGAGCCTCGGAAAACATTATCCTCTCAGCTTGAAACAGATTCATCTGAAACTAGTAGTGTACAGGATGAACCAGATATTTCCGAGCTCACTCCTCTACCAGAAGAATTTCCGAGAGGGCTTCGATTCGAAGGGGAAAGCACAGAGTCTAGTAATAAAATCCGGATGGAAGTAGGAAGCTCTAGTGTAGTATCAAATACAAGATCTCAAAGGAATTTCCATCAAAGGCCTGGATTGCGAGATCGGGAAGGTAAAAGCACTGGTCCAGTGACACATGCTGTTACTAGCAGCAGGTATGGGCTGAGGAACCTCAGATGCAACTCTATATCTGATGTCATCCCATCTGGTTGTTCTTCATCAGATTCAACCCTTAATAGAAGGAAGGGTATAATAAAAAAGAAAAACTGTGAAGGGGAAAGTAGTTCCACTGCAGGGAAGAAGATGACTGGGTCTTCACTTGAAGGACTGAATTCTGGCTCCAGAAATGGCATATCTATATCTGATACAAGAAGGGCTAGAAATGTTCCTTCTCATAGGGACAGCAGCACAGCAACGTTTAGAGGTCAAAGATCAATTAGTGGTCATGCCAGGGGAAGATTTTCTAGCCAAGGAAATGAAAACCCCATGGTAACCAATGAGTCCCCTGTTACGGTACCTTTTTCACCTCATTCTGGTAATCTTACTGCTCCTGGCATTTCATACCATACTTCTGTGGAGACTCCTTTAGGCCATCCAAGCTCTTATAGTAGTAGACCAGGTACTAGCAGTGAGCAGTTATGTGGTGTTATGCCTGTATCTCGCGCAGAATATGGCATCACTCATTCTCTAATGAATGGGGATAGCTTTCGGAGCTACAACATGGATGGTATTGCAGAGGTATTATTTGCACTTGAGAGGATTGAACAAGATGAAGAGCTAACCCATGAGCAAATTCTTTTACTAGAGACCAACTTGTTCCTCAATGGACTAAACTTCTATGATCATCATAGAGACATGCGGTTGGATATTGATAACATGTCATACGAGGAGCTTTTAGCTCTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAGAACTTTCAGAATGCCTTAAGAGAAGTATATATCAGTCTGCACCTTCAGATGATGCAGCTGAGAAATTTAATGAGGATAAGGAAGATATCAAATGCAGCATTTGCCAGGAAGAATACATTGTTGGAGATGAAGTTGGGAGACTGCAATGCGAGCATAAATTTCATGTGGTTTGTATACAGGAGTGGCTGGGGCTGAAGAACTGGTGCCCTATTTGCAAAGAATCAGCTGCACTGTCCAATTCATCTTCAACCCATTGA 1605 0.4262 MDEYSGKRGIDGVVVPRKGMGLEFRNTANTRDRNGQICRQLGCSSKANSSKDAHVRSSEKGKSLRTSSSGKEAIGSSSRMTSNPGKPLMEPRKTLSSQLETDSSETSSVQDEPDISELTPLPEEFPRGLRFEGESTESSNKIRMEVGSSSVVSNTRSQRNFHQRPGLRDREGKSTGPVTHAVTSSRYGLRNLRCNSISDVIPSGCSSSDSTLNRRKGIIKKKNCEGESSSTAGKKMTGSSLEGLNSGSRNGISISDTRRARNVPSHRDSSTATFRGQRSISGHARGRFSSQGNENPMVTNESPVTVPFSPHSGNLTAPGISYHTSVETPLGHPSSYSSRPGTSSEQLCGVMPVSRAEYGITHSLMNGDSFRSYNMDGIAEVLFALERIEQDEELTHEQILLLETNLFLNGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALTEEELSECLKRSIYQSAPSDDAAEKFNEDKEDIKCSICQEEYIVGDEVGRLQCEHKFHVVCIQEWLGLKNWCPICKESAALSNSSSTH 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi80g00042 534 MobiDBLite consensus disorder prediction 1 180 - -
Sebi80g00042 534 MobiDBLite consensus disorder prediction 224 259 - -
Sebi80g00042 534 MobiDBLite consensus disorder prediction 62 84 - -
Sebi80g00042 534 FunFam E3 ubiquitin-protein ligase arkadia 443 527 - -
Sebi80g00042 534 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 66 526 IPR045191 GO:0061630
Sebi80g00042 534 MobiDBLite consensus disorder prediction 27 51 - -
Sebi80g00042 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 526 IPR013083 -
Sebi80g00042 534 SMART ring_2 481 521 IPR001841 -
Sebi80g00042 534 ProSiteProfiles Zinc finger RING-type profile. 481 522 IPR001841 -
Sebi80g00042 534 SUPERFAMILY RING/U-box 475 525 - -
Sebi80g00042 534 MobiDBLite consensus disorder prediction 266 318 - -
Sebi80g00042 534 MobiDBLite consensus disorder prediction 140 161 - -
Sebi80g00042 534 MobiDBLite consensus disorder prediction 223 318 - -
Sebi80g00042 534 MobiDBLite consensus disorder prediction 94 114 - -
Sebi80g00042 534 Pfam Ring finger domain 480 522 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi80g00042 Sebi-Chr80 1456694 1459088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi80g00042 371 525 C3H Transcription Factor Family AT2G15530 41.615 1.47e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi80g00042 - - gmx:100812055 756.518