LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi80g00020	ATGTCTCGTGTGTATGTGGGTAATCTGGATTCGAGAGTTACAGAGAGGGACCTTGAAGATGAATTCCGTGTTTTCGGAGTAATTCGAAGTGTTTGGGTTGCACGGAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATTCGTGAATTAGATGGCCTATGGGCAAGCAGATGCTCTGTTTCTTCTACTTCTGCCTATGGGCAAGCAGATGCTCTGTTTCTTCTACTTCTGCCTTGCAAATCTCTTATGCAAGCAGCAGGCCTGCAAGGATTTGCACTGCTTTGGAGTGTTATCGCAAGCTACACATCTGTTGCATATTGGGTTTGTTTTATGAGATGTGTGCTACTACAATTAACCTATGGGCCATGCAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCTAGAGGTGGAGGTGGAGGCCGGGGTCGCTCTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGTCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGCAGTCCACCTCGATTTCGTAGAAGCCCGAGTTATGGGCGAAGGAGCTACAGTCCTCGTGGGCGGTCCCCAAGACGCCGCAGTTTGTCACCTCGTGGACGCAGCTACAGCAGGTCACCTCCTTACCGCGGGCGTGAGGAGGTTCCATATGCTAATGGAAATGGACTCAGGGAACGACGCCGAAGCAGGAGTTAA	747	0.4993	MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGLWASRCSVSSTSAYGQADALFLLLLPCKSLMQAAGLQGFALLWSVIASYTSVAYWVCFMRCVLLQLTYGPCKNGWRVELSHNSRGGGGGRGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi80g00020	248	FunFam	Serine/arginine-rich splicing factor 7	2	69	-	-
	Sebi80g00020	248	SUPERFAMILY	RNA-binding domain, RBD	3	61	IPR035979	GO:0003676
	Sebi80g00020	248	Gene3D	-	154	211	-	-
	Sebi80g00020	248	ProSiteProfiles	Zinc finger CCHC-type profile.	159	174	IPR001878	GO:0003676\|GO:0008270
	Sebi80g00020	248	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	60	IPR000504	GO:0003723
	Sebi80g00020	248	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Sebi80g00020	248	SMART	c2hcfinal6	159	175	IPR001878	GO:0003676\|GO:0008270
	Sebi80g00020	248	MobiDBLite	consensus disorder prediction	174	248	-	-
	Sebi80g00020	248	SUPERFAMILY	Retrovirus zinc finger-like domains	140	178	IPR036875	GO:0003676\|GO:0008270
	Sebi80g00020	248	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	228	-	-
	Sebi80g00020	248	FunFam	Serine/arginine-rich splicing factor RSZ22A	156	216	-	-
	Sebi80g00020	248	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Sebi80g00020	248	CDD	RRM_SRSF3_like	3	61	-	-
	Sebi80g00020	248	Gene3D	-	2	69	IPR012677	-
	Sebi80g00020	248	Pfam	Zinc knuckle	159	174	IPR001878	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi80g00020	Sebi-Chr80	677106	680225	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi80g00020	2	66	Eukaryotic Initiation Factors Gene Family	AT2G36660	35.714	9.21e-07	47.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi80g00020	K12896		-	gmx:100796961	126.716