Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi80g00011 ATGTTGGCCATTAGTTTTGTGCCAACCAGTGGTGACACAACTGGTCAAATTTTGATGAGGTTTAGAAGCTTTTTGTCCAATGACAATGCTTTAAATAACTGGGGTGATGAGTCTAATTTGTGCAACTGGGCTGGTTTATTATGCACCAAGCAGGTATTTTATGGGTTGAGACTAGAGAATATGGGACTAGGTGGGAAGGTTGATGTAGACACCTTGTTGGAATTGTCAAATTTGGTCAGTTTTAGTGTCATTAACAACACATTTGAGGGTCCAATGCCTGAATTCAAAAAGCTTGTGAAGTTAAGGGCATTGTTTCTGTCCAATAACAATTTCTCTGGTGAAATTCCGGATGATGCTTTTGAGGGCATGAAAAGGCTTAAAAGGGTATTCTTGGCAGAAAATAGGTTCACGGGTCATATACCTAAGTCCCTTGCTAACTTGCCTAGACTTTTGGATTTGAACTTGCATAAGAATAGTTTTGGAGGCAACATACCGGAATTTCAGCAAAAGGATTTCAGGGTATTTAATTTATCAAACAACCAATTGGAGGGTCCAATACCAGAAAGCTTAAGCAACATGGATCCAAGCTCATTTGCTGGTAACAAAGGCTTATGTGGAAAACCTGTAAGCGGCCCCTGCAACAACAACACCACAAAATCTCAGGTGCTTCCCATCCCCACTTCTCCACCTGAAGGAAAGGGAAAGAAGCACCACATCCTTATAATTGTTATTGTTGTGGTGTCTGTGGTTGTCTTGGCTTCAATAGCAGCACTTCTGTTTATCCATAACCGCCAGAGACGAAGCTTGCAACCTTTAATAGGCCAGCAGGTGAATTCCCATGACAGTAAAGGTTTCAGGGAGGCACAATCCATTGATGTGATAGGTGATTTCAAGAAGGGTGAGAATGGTGATTTGAACTTTGTTAGGGAAGACAGAGGGGGTTTTGATTTGCAAGACTTGCTTAGGGCCTCAGCTGAGGTTCTTGGCAGTGGAAGTTTTGGGTCCACTTACAAGGCTATGGTTTTGAATGGACCAGCTGCTGTGGTTGTGAAGAGATTTAGGCACATGAACAGAGTTGGGAAACAAGAGTTCTATGAGCATATGAGGAAGCTTGGAAGTTTGACACATCCTAATCTACTCCCTCTTGTTGCATTCTACTACAGGAAAGAAGAGAAGTTTTTGGTTTATGACTTTGGTGAAAATGGCAGCTTAGCCAGTCATCTACATGGTAGAAATGGTACTGTGCTAAACTGGTCAACTCGTTTGAAAATCATAAAAGGAGTAGCCAGGGGCTTAGCATACCTCTACAGAGAGTTCCCTGGACAAAACCTACCTCATGGCCATCTTAAATCCTCCAATGTGGTATTAGACCATTCATTTGAGCCACGTTTAACAGAGTATGGACTTGTGCCAGTGATGAACAAGAGCCATGCTCAGCAGTTCATGGCAGGCTACAAGTCCCCAGAGGTGAGCCAGTTTGACAGACCCAATGAGAAGACAGATGTTTGGTGTTTGGGGATCCTCATACTGGAATTGTTGACAGGGAGGTTCCCAGCAAACTATCTAAGACATGGGAAGGGTGAAAATGCAGATTTGGCAACATGGGTTAACTCAGTTGTGAGGGAAGAGTGGACTGGTGAGGTGTTTGATAAAGATATATTGGGTACAAGGAATGGAGAGGGTGAGATGCTGAAGCTGTTGAGGATTGGGATGTATTGCTGTGAATGGAGTGTGGAGAGTAGGTGGGATTGGAGAGAGGCAGTGGCAAAGATTGAGGAGTTGAAGGAGAAAGATAGTGAAGATGAATTCTCTTATGTTAGTGATGGAGATTTATACTCAAGGACTATGACTGATGATGACTTCTCTTTGTCTGTCAGTGACTCAAGGGTTGGCCAATGA 1899 0.4302 MLAISFVPTSGDTTGQILMRFRSFLSNDNALNNWGDESNLCNWAGLLCTKQVFYGLRLENMGLGGKVDVDTLLELSNLVSFSVINNTFEGPMPEFKKLVKLRALFLSNNNFSGEIPDDAFEGMKRLKRVFLAENRFTGHIPKSLANLPRLLDLNLHKNSFGGNIPEFQQKDFRVFNLSNNQLEGPIPESLSNMDPSSFAGNKGLCGKPVSGPCNNNTTKSQVLPIPTSPPEGKGKKHHILIIVIVVVSVVVLASIAALLFIHNRQRRSLQPLIGQQVNSHDSKGFREAQSIDVIGDFKKGENGDLNFVREDRGGFDLQDLLRASAEVLGSGSFGSTYKAMVLNGPAAVVVKRFRHMNRVGKQEFYEHMRKLGSLTHPNLLPLVAFYYRKEEKFLVYDFGENGSLASHLHGRNGTVLNWSTRLKIIKGVARGLAYLYREFPGQNLPHGHLKSSNVVLDHSFEPRLTEYGLVPVMNKSHAQQFMAGYKSPEVSQFDRPNEKTDVWCLGILILELLTGRFPANYLRHGKGENADLATWVNSVVREEWTGEVFDKDILGTRNGEGEMLKLLRIGMYCCEWSVESRWDWREAVAKIEELKEKDSEDEFSYVSDGDLYSRTMTDDDFSLSVSDSRVGQ 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi80g00011 632 FunFam Pollen receptor-like kinase 1 400 605 - -
Sebi80g00011 632 ProSitePatterns Protein kinases ATP-binding region signature. 328 361 IPR017441 GO:0005524
Sebi80g00011 632 Pfam Leucine rich repeat N-terminal domain 15 48 IPR013210 -
Sebi80g00011 632 SUPERFAMILY L domain-like 34 197 - -
Sebi80g00011 632 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 69 164 - -
Sebi80g00011 632 Pfam Protein kinase domain 325 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi80g00011 632 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 600 IPR046959 -
Sebi80g00011 632 SUPERFAMILY Protein kinase-like (PK-like) 326 594 IPR011009 -
Sebi80g00011 632 ProSiteProfiles Protein kinase domain profile. 322 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi80g00011 632 Gene3D Ribonuclease Inhibitor 171 212 IPR032675 -
Sebi80g00011 632 Gene3D Transferase(Phosphotransferase) domain 1 400 614 - -
Sebi80g00011 632 Gene3D Ribonuclease Inhibitor 12 170 IPR032675 -
Sebi80g00011 632 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Sebi80g00011 632 Gene3D Phosphorylase Kinase; domain 1 293 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi80g00011 Sebi-Chr80 441303 444436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi80g00011 1 623 Receptor kinase-like Gene Family AT4G31250 45.655 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi80g00011 Pkinase 9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi80g00011 - - tpra:123893577 968.763