Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi809g00015 ATGGCTCTTCTGAATGGTCCCTTTGATTCTGTTAAGGACACTGTTCATGATAGGAGAGAGGCTTTGAGGCTTAAAGTTCGAGTTGTTAGGGTTTGGGAAATATGCCAAAAAAATAATCCTGCCAATGTTTTTTCTGTTGAAATGGTCTTGGTAGATTCTGAGGGTGGGAGAATCCAAGCAAGTATAAGGAAAGCAATGATCAGGAAATTTAGAAGCTCCATTGTTGAGGGTGGGGTGTATAAGATGATTTATTTTCGGCTGGTTGAAAATGGGGGTGAATATAGGGCATGTTCCCATGAGTTTAAGTTGCTGTTTCAGCCAAGGACAAGGATTTTTCCTACTGAGAGTGAGGTGATACCTAGATTTGATATCCAAGCTAAGAACTCTGAGGATCTTCAAGAGACCAATGGTGTTTCGCAGTATATGTTTGATTTCATTGGTCTTTTGACTGCTGTTGGTGAGGAGAAGGAGTTTATCAAATTCGGGAAACCTATTAGGGTGCTTGAAATTGAGCTCACAGATGATAAGGGTGTCATGAAGTGTTCATTATTTGGACACTTCATTGAGATGATGAAAAATTTCTTGGCTAATGGTGTGGATGACCTTGGTATTTTGGTCATTCAGTTTGCAAAGGTGAAGGAATACCTTGGTAAAGTTTCTCTTCATATTGTGAGTAACTCCACAAGGTTACTTTGGAATCCTCAGATTCCAGAGGAGGGGCACTTTATATGCCTTGGAACTATTGAAGGAATTGTGAAAGATGACCATTGGTGGTATATCGCATGTAAATGCCATAAATTTGTCAACTTAAATGATTCTGGGACTTATTATTGTTCTGGCTGTGTGGCATTTGTTTCGGATGTTACTCCTAGATATAAACTGAAGTTGGAAGTTAGGGACCATAGTGAAACTGCTCATTTCATGCTGTTTGATTTTGATGCTGCTTCATTGTTATCCATGTCATGTGCCTCAATTGTTGGTGATGCGAAGGTTCCTACCCTTGAATATCCCCCTGAGTTGGACATTGTCATTGGCAAGGAGCTTTTGTTTAAGGTTGAAGTCAAGGCTGAGCGTGCCTTTAAATTCGATGATTCTTTTAAGGTTAAGAGGACATGTGATGATGATGATATTATTCAAGAGTTCAAGAGTGATGGGTCAATCAGGACCCCTGAGAAGATGAAGCTGAAAGGATCTGTCAATGAGGTGCTTGATGTGGAGGATGAGCTTCCTGGAGATCAAGCAATAGCCCCTGAAATTGTTCCTGTCATTGAACTCTACAATGAAAGTGAAATGAGCCCCCTCTCTCTTGAGGAGTCCTCCAGTGCTGCTACATGCCTAGCTCCCCAGAAACGTAAGCCTGGGCCACGTGCTGGACGTGGTGGCCTTGCAAAGAAGAGCCTGCACCCAAAGGTGCTGAAGGTTGAGAAGGATTAG 1434 0.4191 MALLNGPFDSVKDTVHDRREALRLKVRVVRVWEICQKNNPANVFSVEMVLVDSEGGRIQASIRKAMIRKFRSSIVEGGVYKMIYFRLVENGGEYRACSHEFKLLFQPRTRIFPTESEVIPRFDIQAKNSEDLQETNGVSQYMFDFIGLLTAVGEEKEFIKFGKPIRVLEIELTDDKGVMKCSLFGHFIEMMKNFLANGVDDLGILVIQFAKVKEYLGKVSLHIVSNSTRLLWNPQIPEEGHFICLGTIEGIVKDDHWWYIACKCHKFVNLNDSGTYYCSGCVAFVSDVTPRYKLKLEVRDHSETAHFMLFDFDAASLLSMSCASIVGDAKVPTLEYPPELDIVIGKELLFKVEVKAERAFKFDDSFKVKRTCDDDDIIQEFKSDGSIRTPEKMKLKGSVNEVLDVEDELPGDQAIAPEIVPVIELYNESEMSPLSLEESSSAATCLAPQKRKPGPRAGRGGLAKKSLHPKVLKVEKD 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi809g00015 477 PANTHER OS03G0429900 PROTEIN 241 361 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi809g00015 477 CDD RPA1_DBD_B_like 144 238 - -
Sebi809g00015 477 SUPERFAMILY Nucleic acid-binding proteins 131 242 IPR012340 -
Sebi809g00015 477 CDD RPA1_DBD_A_like 23 111 - -
Sebi809g00015 477 MobiDBLite consensus disorder prediction 434 477 - -
Sebi809g00015 477 SUPERFAMILY Nucleic acid-binding proteins 20 115 IPR012340 -
Sebi809g00015 477 Gene3D - 231 379 IPR012340 -
Sebi809g00015 477 Gene3D - 133 230 IPR012340 -
Sebi809g00015 477 Gene3D - 13 116 IPR012340 -
Sebi809g00015 477 CDD RPA1_DBD_C 242 382 IPR047192 -
Sebi809g00015 477 Pfam Replication factor-A C terminal domain 243 371 IPR013955 -
Sebi809g00015 477 Pfam Domain of unknown function DUF223 47 115 IPR003871 -
Sebi809g00015 477 SUPERFAMILY Nucleic acid-binding proteins 239 372 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi809g00015 Sebi-Chr809 294967 297443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi809g00015 24 322 Core DNA Replication Machinery Family AT5G45400 20.879 1.85e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi809g00015 - - lja:Lj6g3v0884310.1 327.791