Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi806g00010 ATGGACCTTAGAGGATATCCCCAATTAATTATTGAATTCATGGGGTCTGACATAAGCATTAGACCAGGATCATGGAATGGCCAGGCTGTGACTGGAAATCCACGTCCAACGCCTCGATTGTCACAAACATTTGGGTTCAATGAAAAAGAAGTGTATTATGAGTTCGAGCTTCTTGTGGGATCGACTTTCAGCGTATATACACTATCCCCATCAGGCACTGGACAGATTTATTTGTGGACAACTCAGAAAGGAAGCAGGGAAGTCCTCTCAGTTGTGGATGAAATTCAGTGTGACAATTATGCCATTTGCGGTGCAAATTCTATATGCAATGTTGATGGTTACCATCTAACTTGTGAATGCCTGAAAGGATATGTTCCCAAGTTTCCTCAACAATGGAATTTATCAATTTGGACCAATGGTTGTGTTCCAAGGAATGAATCTAATTGCACAAGTAGTCACACAGATGGCTTCTGGAAGTACACACAGATGAAATTGCCAGACACGTCTTCGTCATGGTATAATAAGACCATGAGCCTCGAGGAATGTCAGAAATCATGTCTGAAAAACTGTTCATGTGTAGCATATGCAAATTTAGATACTCGTAATGGAGGAAGTGGTTGTCTACTCTGGTTTAACAATGTGCTTGACGTGAAGAAATTCTCTCAATGGGGAGGACAAGATCTCTATGTCAGAGTCCCTGCATCAGAACTAGATCATGTTGCAGCAATTGACCATGGAAATAGGAAGAAAGAGATGGTAGGAATTACAGTTGGTATGATTATTTTCAGATTAATTACATGTGCATCCATATTGATGATTAAGAATCCAGGGATTGCAAGAAAAATTTACAACAACCATTACAAAAATAAACTGAGGAAGGAAGACGTTGATCTTCCAACATTCGATTTATCAATCTTAATTAATGCTACTGAAAACTTTTCAAGTAGTAACAAACTTGGAGAAGGTTGCTTTGGACCAGTATACAAGGGCACACTAATAGATGGGCAAGAGTTAACTGTGAAAAGGCTTTCCAAAAAGTCTAGACAACGGTTTGAGGAGTTTAAAAAAAAGGTAGCATTGATTGCCAAACTTCAACACCGTAATCTTATAAAGCTTCTTGGTTGTTGCATTCAAGGAGAAGAGAAAATGTTGATCTATGAATACATGCCAACAAAAGCTTGGAATACTTTATTTTTCGTTTGA 1203 0.3849 MDLRGYPQLIIEFMGSDISIRPGSWNGQAVTGNPRPTPRLSQTFGFNEKEVYYEFELLVGSTFSVYTLSPSGTGQIYLWTTQKGSREVLSVVDEIQCDNYAICGANSICNVDGYHLTCECLKGYVPKFPQQWNLSIWTNGCVPRNESNCTSSHTDGFWKYTQMKLPDTSSSWYNKTMSLEECQKSCLKNCSCVAYANLDTRNGGSGCLLWFNNVLDVKKFSQWGGQDLYVRVPASELDHVAAIDHGNRKKEMVGITVGMIIFRLITCASILMIKNPGIARKIYNNHYKNKLRKEDVDLPTFDLSILINATENFSSSNKLGEGCFGPVYKGTLIDGQELTVKRLSKKSRQRFEEFKKKVALIAKLQHRNLIKLLGCCIQGEEKMLIYEYMPTKAWNTLFFV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi806g00010 400 Gene3D Phosphorylase Kinase; domain 1 276 388 - -
Sebi806g00010 400 Pfam S-locus glycoprotein domain 21 128 IPR000858 GO:0048544
Sebi806g00010 400 SUPERFAMILY Protein kinase-like (PK-like) 297 391 IPR011009 -
Sebi806g00010 400 SMART ntp_6 152 232 IPR003609 -
Sebi806g00010 400 ProSiteProfiles EGF-like domain profile. 93 130 IPR000742 -
Sebi806g00010 400 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 395 - -
Sebi806g00010 400 ProSiteProfiles Protein kinase domain profile. 313 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi806g00010 400 Pfam PAN-like domain 149 217 IPR003609 -
Sebi806g00010 400 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 278 388 - -
Sebi806g00010 400 Pfam Protein tyrosine and serine/threonine kinase 316 391 IPR001245 GO:0004672|GO:0006468
Sebi806g00010 400 Gene3D Hepatocyte Growth Factor 147 226 - -
Sebi806g00010 400 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 148 232 - -
Sebi806g00010 400 CDD PAN_AP_plant 147 233 - -
Sebi806g00010 400 ProSiteProfiles PAN/Apple domain profile. 149 233 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi806g00010 Sebi-Chr806 275541 278969 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi806g00010 301 399 Receptor kinase-like Gene Family AT4G23140 55.556 4.27e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi806g00010 S_locus_glycop 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi806g00010 - - gmx:100815430 557.755