Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi805g00020 ATGATGAAGAGATGCAAAGTCGACGATGAGGGTGAGGTAGATGAAACGGCTAATTGTTTGATGTTACTGTCCAAAATTGGTGACCCATCCAGAGAGAGAGTTTTGAAGGGTGGGACTGGGGGTGGGGGATTTAGGTGCAAGACTTGTAACAGACAGTTCCTTTCTTTTCAAGCCCTTGGGGGCCACAGGGCTAGCCACAAGAAGCTAAAGCTCATGGATACAGACCTTGCTTCCTGCCTGCAGTTATTACCAACCAAGAAACTAAAGATGCACATGTGCCCTGTTTGTGGGCTTGAGTTTGAGATTGGACAAGCGCTAGGAGGACACATGAGGAAGCATAGAGCTGCGGTGCCCACCATATCTAATGTAGCTACTAAAAAGTTTCAAGACTTGTGCTTGGATTTGAACTTGACACCCTACGAGAATGATATGAACCTCAACTTAAGGACACACCTGTATTAA 462 0.4589 MMKRCKVDDEGEVDETANCLMLLSKIGDPSRERVLKGGTGGGGFRCKTCNRQFLSFQALGGHRASHKKLKLMDTDLASCLQLLPTKKLKMHMCPVCGLEFEIGQALGGHMRKHRAAVPTISNVATKKFQDLCLDLNLTPYENDMNLNLRTHLY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi805g00020 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Sebi805g00020 153 Pfam C2H2-type zinc finger 44 68 - -
Sebi805g00020 153 Pfam C2H2-type zinc finger 91 115 - -
Sebi805g00020 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Sebi805g00020 153 SMART c2h2final6 91 113 IPR013087 -
Sebi805g00020 153 SMART c2h2final6 44 66 IPR013087 -
Sebi805g00020 153 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Sebi805g00020 153 SUPERFAMILY beta-beta-alpha zinc fingers 44 113 IPR036236 -
Sebi805g00020 153 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Sebi805g00020 153 Gene3D Classic Zinc Finger 42 113 - -
Sebi805g00020 153 PANTHER ZINC FINGER PROTEIN ZAT5 12 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi805g00020 Sebi-Chr805 335803 336264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi805g00020 14 128 C2H2 Transcription Factor Family AT3G46080 50.000 4.85e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi805g00020 zf-C2H2_6 1.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi805g00020 - - gmx:112998408 166.007