LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi805g00005	ATGGCAATCGAAAGGGTGGTTGGCTCGGTGTTGAAGCCATATCACCGGCGTGATAAAGAAAGGATGGGGAGGCTTTGTGGTAGCTTATGTAGAGACACTATAATGGTTGGATCACAAGTTCATGGTGAAGAGCTCATATATAAACCTCACACACCAAACCGGAAAACCCTAGAGCCGGATTGTTCCTCTGCCTCTGCCGCGCAGGAATATTCAACAGGTAGGGTTTCTTTTCCTTCCGCGATCAATGGCTCCGCCAAAAGGTATGTTCATGTTCCTCATCTTTCTCTTTTGAATTTCCCTTCTGCAAAATTTAAACTGAAAGAATTAGCGTTGAGGTTTATGATAGTATTGGAATCAAATCAAGCATGTGATAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAAAGCAGTGAAGTCAGGCCCTACCTTTAAGAAGAAGGCCAAGAAGATCCGAACATCTGTCACGTTCCATAGGCCAAAGACATTGAAAAAGGATAGGAGCCCCAAATACCCTCGCATTAGTGCCACACCCAGGAACAAGCTTGATCACTACCAGATTCTGAAATTCCCTCTCACCACTGAGTCGGCAATGAAGAAAATTGAAGACAACAACACTTTGGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATAAAGGATGCAGTCAAGAAAATGTATGACATCCAGGCCAAGAAGGTTAACACCTTGATCAGGCCTGATGGTACCAAGAAGGCCTATGTCAGGTTGACTCCTGATTATGATGCATTGGATGTAGCTAACAAGATTGGGATTATCTAA	810	0.4358	MAIERVVGSVLKPYHRRDKERMGRLCGSLCRDTIMVGSQVHGEELIYKPHTPNRKTLEPDCSSASAAQEYSTGRVSFPSAINGSAKRYVHVPHLSLLNFPSAKFKLKELALRFMIVLESNQACDKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRSPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	269

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi805g00005	269	Pfam	Ribosomal protein L23	189	251	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Sebi805g00005	269	PANTHER	60S RIBOSOMAL PROTEIN L23A	122	269	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Sebi805g00005	269	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	186	262	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Sebi805g00005	269	FunFam	60S ribosomal protein L23a	149	269	-	-
	Sebi805g00005	269	Hamap	50S ribosomal protein L23 [rplW].	189	269	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Sebi805g00005	269	Pfam	Ribosomal protein L23, N-terminal domain	130	178	IPR005633	-
	Sebi805g00005	269	Gene3D	-	150	269	IPR012677	-
	Sebi805g00005	269	NCBIfam	50S ribosomal protein L23	193	269	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Sebi805g00005	269	ProSitePatterns	Ribosomal protein L23 signature.	247	262	IPR001014	GO:0019843

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi805g00005	Sebi-Chr805	94797	98719	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi805g00005	142	269	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	91.406	2.10e-67	204

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi805g00005	K02893		-	pvy:116105236	276.944