Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi804g00021 ATGATTATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACCCGGTGGGTGAGAATGACGAGTGCTCTTATGCTCGTAAGAAGAGGAAGACAAACGGGTACTACCCTCTGAACCTTCTCGGCGATGTCGCCAACGGTATAATCCCGGTGAGTTTTCACGGTCTTCTGAGTGCTGGTGTGACAGAGAAAGGATTCTCTGCATCGTGGTGCACCCAAGTTTCGTGCTCCCCTGGTGAAGTGGAATCGAACTCGAAGGGTGAGGCTGTTCCAGCGAAGAAAAACCAGGTTCAGCGGCCGCCACTGGTTCGGACTTCGAGGGGGCGAGTGCAGGTTCTCCCTTCTCGCTTCAATGACTCAGTTATTGATAATTGGAGGAAGGAGAGTAAGACCAACTTACGTGATTGTGATATCGAAGATGAATTTGAATGCAAGAGGGATAAGTTAAGCTTCAAGACACCCAAAACTTGCAACCAGAATGCGAGGAAAGGGCGAAACGATGAGAAAATCGGTTCTAAACCTCGCAAGTACTCGGCATTGTGTGGGGATGATGTTGGTGTGAGGTATAAGAGTTTTGGTACGAGCAAACATTCAACTTTGCGTGGTGCATTGGCCTCGAGGCGTGAGATGTTTGTTGAGGATGAGAGAGGAAGGTTTTTGGAAGAGGATGGGGTTGATTTGATGGGGAATGATAGATTATTGAAGGAGAATGGGGAGAAAAAGGATGGGCTGTATGGACCAGAAGATTTTTATGCAGGTGATATTGTGTGGGCCAAAGCAGGGAGGAAGGAACCTTTTTGGCCTGCCATTGTCATTGATCCTACGAGACAGGCACCTGAGCTGGTTCTGAGGTCTTTTATAGCTGATGCAGCTTGTGTCATGTTTCTTGGGTATGCTGGGAGTGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCACGATTTTTCCATTTATGGATTATGTAGACAGGTTTCAAGGGCAGTCTGAATTGAGTTTCTATAATCCCTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCAGACCAGGGCTTCACAGAGAGGTTGATAGCTGATATAAATGCAGCAGCTGGTAATGCTGGTTTTGATGATACTGTTCTGAAATCCTTTGAGGACGTAACTGGTCCAAACCAGTATGCTGGACATCACTTTTTGAAGCAGGATTTATTTGACAAGAAAGACACACGACCCTGTGAAGCCTGTGGATTGGGCCTTCCTTACAAGATGTCAAAGAAAACAAAGGATTCAACACCTAGTGGTCAATTCCTATGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCAGAATGCGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACCTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAGTGGAACAAAAACAATGGGCAGCTAGTGCTTCCAAATAAAGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTCATGTCAGATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCTTGGGTTTGTAAAGCTTGTGAAAAACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGTAGGCAGACAACAAAAATGGTTTCTTATTGTGCTTATCACAGGGCTCCAAATCCAGACACTGTTTTGATCATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAGCTGGATCAAGGTTAATCTCATCCAACAGAATAAAGCAAGAAGACACTCCTGTTGATAATGTTGAGCATGACCCATTCTCTGCTGCTAGGTGTCGTATCTTTCAAAGAACAAATCACACTAAAAAGAGAGCAGCAGATGAAGCCATTTTTCTTCAAGTGAGGGGTGGTAGAGGAACCTCAGGCATTTTCTTCGTTCAGAGAACGCCTTTACCACTTGCAGGCATACATGGATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGCGAAATGGTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGCATCGCAGATCTGAGAGAGGCACGCTATAGATCAGAAGGGAAAGACTGCTATGTATGA 2544 0.4422 MIIKRNLKSQMPSLKRCKLGDPVGENDECSYARKKRKTNGYYPLNLLGDVANGIIPVSFHGLLSAGVTEKGFSASWCTQVSCSPGEVESNSKGEAVPAKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTNLRDCDIEDEFECKRDKLSFKTPKTCNQNARKGRNDEKIGSKPRKYSALCGDDVGVRYKSFGTSKHSTLRGALASRREMFVEDERGRFLEEDGVDLMGNDRLLKENGEKKDGLYGPEDFYAGDIVWAKAGRKEPFWPAIVIDPTRQAPELVLRSFIADAACVMFLGYAGSENQRDYAWVKHGTIFPFMDYVDRFQGQSELSFYNPSDFQMAIEEAFLADQGFTERLIADINAAAGNAGFDDTVLKSFEDVTGPNQYAGHHFLKQDLFDKKDTRPCEACGLGLPYKMSKKTKDSTPSGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLVLPNKVTVLCNGVEGIYFPSLHSCQIAVHQECYGARNVRDFTSWVCKACEKPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKAGSRLISSNRIKQEDTPVDNVEHDPFSAARCRIFQRTNHTKKRAADEAIFLQVRGGRGTSGIFFVQRTPLPLAGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRSEGKDCYV 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi804g00021 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 700 IPR013083 -
Sebi804g00021 847 CDD PHD_TCF19_like 451 501 - -
Sebi804g00021 847 CDD PWWP_AtATX3-like 257 361 - -
Sebi804g00021 847 CDD ePHD_ATX3_4_5_like 586 697 IPR041955 -
Sebi804g00021 847 Pfam PWWP domain 259 352 IPR000313 -
Sebi804g00021 847 SUPERFAMILY FYVE/PHD zinc finger 448 505 IPR011011 -
Sebi804g00021 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 523 580 IPR013083 -
Sebi804g00021 847 Pfam PHD-finger 450 503 IPR019787 -
Sebi804g00021 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 506 IPR013083 -
Sebi804g00021 847 FunFam Histone-lysine N-methyltransferase 581 700 - -
Sebi804g00021 847 ProSiteProfiles Zinc finger PHD-type profile. 448 504 IPR019787 -
Sebi804g00021 847 ProSiteProfiles PWWP domain profile. 258 327 IPR000313 -
Sebi804g00021 847 Pfam PHD-finger 551 578 - -
Sebi804g00021 847 SUPERFAMILY SET domain 800 845 IPR046341 -
Sebi804g00021 847 MobiDBLite consensus disorder prediction 85 105 - -
Sebi804g00021 847 Gene3D SET domain 716 847 IPR046341 -
Sebi804g00021 847 Gene3D - 253 358 - -
Sebi804g00021 847 SMART PHD_3 537 578 IPR001965 -
Sebi804g00021 847 SMART PHD_3 450 502 IPR001965 -
Sebi804g00021 847 SMART PHD_3 642 698 IPR001965 -
Sebi804g00021 847 Pfam PHD-zinc-finger like domain 585 697 - -
Sebi804g00021 847 SUPERFAMILY Tudor/PWWP/MBT 251 355 - -
Sebi804g00021 847 ProSiteProfiles Extended PHD (ePHD) domain profile. 583 698 IPR034732 -
Sebi804g00021 847 PANTHER PHD FINGER PROTEINS 13 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi804g00021 Sebi-Chr804 363426 372162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi804g00021 407 475 EF-hand Containing Proteins AT5G28340 52.174 1.68e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi804g00021 zf-HC5HC2H_2 1.6e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi804g00021 - - aprc:113853254 977.622