Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi804g00011 ATGGAAGTAGAGCCTGCAGTTGCACTTAACTGTCCTGAATTATGGTGCGGAAATCAGGTGGTTCGATTCCCGTTCCGAATCAAAGGCCGGCATCCACAACTCTGTGGCTATCCGGGCTTTGATTTATTTTGTTCCTCAACGAATGAGACTGTGATTCAACTCCCTGAGTCAGTGAAGCTCATTGTCAACCATATTGACTATACACAACAAACTATTGAGTTATCTGATCCACATGGCTGCCTTCCCAGACACCTCCCCAACCTCACTCCTTCAGCTTCCCACTTCCAGTTCCAGCATCCTAACTACTATGATGATAGCTATTTCTTTTTCAACTGTTCACCGATGAACAGAGATACTATAGACTACTATTTGGTTCCATGCCTAACCACCTCTACCTCTCAAACATACGCCATTCCCTCTAGTAGAACCATTGACTACCTGCCCCTGTTTTTTTGCACCAAAATGTTTAATATCTCATCCTTCCCTTTTGATTTTAATTCCGAGGACAACGTTCTTCGTTTGACATGGTCTGAGCCAAAGTGTAAACATTGCGAATCAAAAGGGAACAGGTGTGGGTGGAAGAATAATACCGCCAACAATGAAATATATTGTTTCGCCAATCACAAAGGTTCATCAACAGCTCTAGTGACCATAGGTGCAGTCTACCACATCTATGACTCTTACATACTCAAGAAAGAAAAACAAGCAATTATTGAAAAATTTCTACAAGACTACAGAGCTCTTAAGCCCACCAGATACTCTTATGTGGAAATTAAGAGAATCACCAATAATTTTAAGGAAAAGTTAGGACAAGGAGCCTATGGAGCTGTGTTTAAAGGAAGCATTTCAAAAGAATTTACTGTTGCTGTCAAGATCCTCAATGTTTCCCTAGGAAATGGGGAAGAGTTCATTAATGAAGTTGGGACAATGGGTAGAATTCACCATCTTAACATTGTTCGCTTGGTCGGTTTCTGTGCCGATGGCTTTAAAAGAGCTCTTATTTATGAGTTCTTACCAAATGGTTCATTGCAGAAGTTCATAAACTCACCAGATAACAGGGAAAACTTCCTTGGTTGGAAAAGGTTGCATGAAATTGCTTTAGGTGTAGCCAAAGGAATTGAGTATCTTCATCAAGGCTGTGATCAGCGTATTCTCCATTTTGATATCAAACCTCAAAATGTGTTACTAGACCAAAACTTTACTCCAAAAATATGTGACTTTGGTCTAGCTAAATTGTGTTCAAGAGATCAGAGCATAGTGTCCATGACTACAGCTAGAGGAACTTTGGGCTACATTGCTCCTGAAGTTTTCTCAAGAAACTTTGGAAATGTATCCTACAAATCAGATGTGTATAGTTATGGAATGATGCTGCTTGAAACAATAGGAGGGAGGAAGATCACAGAGGACTTGGAGGAAAACACTAGCCATGTTTACTACCCAGAATGGGTTCATAATCTTTTAGAAGAACATGAGGAAATGAGAATTCATGTTGATGATGAAGGGGATGCAAAGATTGCAAGGAGACTGGCAATTGTGGGACTTTGGTGCATCCAATGGCATGCTATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTAGAGGGAGACATAGACAGATCCCCAATACCTCCTAATCCTTTTGCTTCAGCAGGACAAAGGAGAAAAGGTGCAAGTGCAACTGTGGGTGCGCCGGCTAGGCAGCTGACCCAAAATTTAGAAGTAATCCAAGAGTTAGATTAA 1743 0.4096 MEVEPAVALNCPELWCGNQVVRFPFRIKGRHPQLCGYPGFDLFCSSTNETVIQLPESVKLIVNHIDYTQQTIELSDPHGCLPRHLPNLTPSASHFQFQHPNYYDDSYFFFNCSPMNRDTIDYYLVPCLTTSTSQTYAIPSSRTIDYLPLFFCTKMFNISSFPFDFNSEDNVLRLTWSEPKCKHCESKGNRCGWKNNTANNEIYCFANHKGSSTALVTIGAVYHIYDSYILKKEKQAIIEKFLQDYRALKPTRYSYVEIKRITNNFKEKLGQGAYGAVFKGSISKEFTVAVKILNVSLGNGEEFINEVGTMGRIHHLNIVRLVGFCADGFKRALIYEFLPNGSLQKFINSPDNRENFLGWKRLHEIALGVAKGIEYLHQGCDQRILHFDIKPQNVLLDQNFTPKICDFGLAKLCSRDQSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGRKITEDLEENTSHVYYPEWVHNLLEEHEEMRIHVDDEGDAKIARRLAIVGLWCIQWHAMDRPSMQMVVQMLEGDIDRSPIPPNPFASAGQRRKGASATVGAPARQLTQNLEVIQELD 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi804g00011 580 Gene3D Transferase(Phosphotransferase) domain 1 338 541 - -
Sebi804g00011 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Sebi804g00011 580 FunFam PR5-like receptor kinase 338 545 - -
Sebi804g00011 580 Pfam Protein kinase domain 265 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi804g00011 580 Gene3D Phosphorylase Kinase; domain 1 237 337 - -
Sebi804g00011 580 SMART serkin_6 263 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi804g00011 580 Pfam Wall-associated receptor kinase galacturonan-binding 11 76 IPR025287 GO:0030247
Sebi804g00011 580 MobiDBLite consensus disorder prediction 541 564 - -
Sebi804g00011 580 SUPERFAMILY Protein kinase-like (PK-like) 245 535 IPR011009 -
Sebi804g00011 580 ProSiteProfiles Protein kinase domain profile. 263 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi804g00011 580 PANTHER RUST RESISTANCE KINASE LR10-RELATED 234 552 IPR045874 GO:0004672
Sebi804g00011 580 ProSitePatterns Protein kinases ATP-binding region signature. 269 291 IPR017441 GO:0005524
Sebi804g00011 580 FunFam S-receptor-like serine/threonine-protein kinase 231 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi804g00011 Sebi-Chr804 188717 190942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi804g00011 9 547 Receptor kinase-like Gene Family AT1G66910 36.953 3.86e-113 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Sebi804g00011 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi804g00011 - - aprc:113873873 857.44