Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi804g00005 ATGGAAACTACGGCAACTGTTTTAAGATCTTTCTCTGATATTTTTTATATAACCCACATAGTTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCTAAGAGGTACCTGTCATCATACTTCCTAATTGACATTCTTGCCGTTCTTCCCCTCCCACAGGTGGTGATTCTAATTATCATTCCAAAGATGAGAGGCTCTGAATCACTGAATACAAAGAACTTGCTGAAATTTATTGTTTTCTTCCAATATGTGCCACGGTTTATACGAATAATTCCATTATATAAAGAAGTTACAAGGACCTCTGGCATTCTCACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTCCTCTACATGCTTGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAAGACGCCTGCCGAAAAAATATCACATGTAACACGGCAGATATGTATTGTGATGATCATCATGGTTCGGGCACAATTTCAACATTCCTGAATACTTCTTGCCCAATACAGGATCAAAATACAACACTCTTTGATTTTGGAATTTTCCTTGATGCCCTTCAATCTGGGGTTGTGGAGTCAAGAGATTTCCCACAAAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATTTGAGTTCTCTTGGTCAGAACCTAGCAACAAGTACCTATGTTTGGGAAATTTGCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGTCAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATCGATTACTCCCTGACAGCCTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACACTTTGATACGTAATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTGGCTTTGCTAATGAGGGTGCCAATATTTGAGAAAATGGATGAGCAACTTTTGGATGCAGTATGTGACCGTCTCAAGCCAGTGCTTTACACAAAAGAAAGCTGCATTGTCCGGGAAGGAGATCCTGTTGATGAGATGCTCTTCATAATGCGAGGCAAACTATTGACTGTGACAACTAATGGAGGAAGAACAGGCTTCTTTAACTCTGAATTCCTCAAAGCTGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCATTAGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACTGTCCAAACTCTTTCAGAAGTGGAAGCCTTTGCTCTAAAAGCTGATGACTTGAAGTTTGTTGCATCTCAATTTCGGCGCCTTCACAGTAAGCAGATTCGCCACACTTTCAGGTTTTACTCACAACAATGGCGTACATGGGCTGCATGCTTCATACAAGCAGCCTGGAGACGCTATAGTAAAAGGAAGCTTGAAGAGTCTCTCAAGGAAGAGGAGAATAGGCTGCAAGATGCATTAGCTAAGGCAGGTGGTAGCTCACCTAGTCTAGGTGCCACAATATATGCTTCAAGATTTGCTGCTAATGCGCTTAGAGCCTTACGTAGAAATGGCACTAGGAAGACCAGGGTGCCAGAGAGAATACCACCCATGCTGCTCCAGAAGCCTGCTGAACCTGATTTTACTGCTGAAGAGCAATAG 1746 0.4227 METTATVLRSFSDIFYITHIVFQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLSSYFLIDILAVLPLPQVVILIIIPKMRGSESLNTKNLLKFIVFFQYVPRFIRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACRKNITCNTADMYCDDHHGSGTISTFLNTSCPIQDQNTTLFDFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVWEICFAIFISIAGLVLFAFLIGNMQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDTLIRNLPKDLRRDIKRHLCLALLMRVPIFEKMDEQLLDAVCDRLKPVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQIRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLKEEENRLQDALAKAGGSSPSLGATIYASRFAANALRALRRNGTRKTRVPERIPPMLLQKPAEPDFTAEEQ 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi804g00005 581 FunFam Cyclic nucleotide-gated ion channel 1 350 468 - -
Sebi804g00005 581 Pfam Ion transport protein 3 281 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi804g00005 581 Gene3D Helix hairpin bin 279 343 - -
Sebi804g00005 581 SUPERFAMILY cAMP-binding domain-like 281 474 IPR018490 -
Sebi804g00005 581 CDD CAP_ED 352 483 IPR000595 -
Sebi804g00005 581 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 576 - -
Sebi804g00005 581 MobiDBLite consensus disorder prediction 553 581 - -
Sebi804g00005 581 Pfam Cyclic nucleotide-binding domain 372 463 IPR000595 -
Sebi804g00005 581 ProSiteProfiles cAMP/cGMP binding motif profile. 352 436 IPR000595 -
Sebi804g00005 581 FunFam Cyclic nucleotide-gated ion channel 1 279 343 - -
Sebi804g00005 581 ProSiteProfiles IQ motif profile. 488 517 IPR000048 GO:0005515
Sebi804g00005 581 SMART cnmp_10 352 483 IPR000595 -
Sebi804g00005 581 SUPERFAMILY Voltage-gated potassium channels 5 278 - -
Sebi804g00005 581 Gene3D Jelly Rolls 350 470 IPR014710 -
Sebi804g00005 581 Coils Coil 504 524 - -
Sebi804g00005 581 Gene3D - 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi804g00005 Sebi-Chr804 116199 121631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi804g00005 1 580 Ion Channels AT5G53130 84.157 0.0 999