Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi802g00014 GTCTGGCGTATTAGGACTGGTCAATGCTTGCGGCGTCTTGAACGTGCACATTCCCAGGGTGTCACAAGTCTTTCCTTCTCCCGTGATGGAAGCCAGTTATTAAGTACTTCGTTTGACAGCACAGCAAGAATCCATGGCCTCAAATCTGGAAAGATCTTGAAAGAGTTTCGTGGCCATACATCTTATGTGAATGATGCAATTTTCACCAATGATGGGAGTCGTGTTATAACTGCATCCAGCGATTGTACAGTCAAGGTGTGGGATGTGAAGACCACAGACTGCATACAAACTTTTAAGCCACCTCCACCTTTAAGGGGAGGTGATGCTTCTGTTAACTCTGTTTTCATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCAATATACATCATGACACTTCAAGGACAGGTTGTAAAGAGTTTCTCATCTGGTAAAAGAGAGGGTGGGGACTTTGTTGCAGCCTGTGTTTCACCTAAAGGGGAATGGATTTACTGTGTTGGTGAAGACAGGAATATGTACTGCTTCAGCCAACAATCTGGAAAATTGGAGCATCTGATGAAGGTATGTTTGTTGAGTTAG 594 0.431 VWRIRTGQCLRRLERAHSQGVTSLSFSRDGSQLLSTSFDSTARIHGLKSGKILKEFRGHTSYVNDAIFTNDGSRVITASSDCTVKVWDVKTTDCIQTFKPPPPLRGGDASVNSVFIFPKNTDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNMYCFSQQSGKLEHLMKVCLLS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi802g00014 197 PANTHER WD40 REPEAT PROTEIN 1 192 IPR045184 GO:0000398
Sebi802g00014 197 SMART WD40_4 91 137 IPR001680 GO:0005515
Sebi802g00014 197 SMART WD40_4 6 46 IPR001680 GO:0005515
Sebi802g00014 197 SMART WD40_4 139 181 IPR001680 GO:0005515
Sebi802g00014 197 SMART WD40_4 49 88 IPR001680 GO:0005515
Sebi802g00014 197 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 91 - -
Sebi802g00014 197 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Sebi802g00014 197 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Sebi802g00014 197 Pfam WD domain, G-beta repeat 7 44 IPR001680 GO:0005515
Sebi802g00014 197 Pfam WD domain, G-beta repeat 50 88 IPR001680 GO:0005515
Sebi802g00014 197 FunFam Suppressor of mec-8 and unc-52 protein homolog 1 15 195 - -
Sebi802g00014 197 ProSitePatterns Trp-Asp (WD) repeats signature. 75 89 IPR019775 -
Sebi802g00014 197 Gene3D - 1 194 IPR015943 GO:0005515
Sebi802g00014 197 SUPERFAMILY WD40 repeat-like 1 192 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi802g00014 13 187 Eukaryotic Initiation Factors Gene Family AT2G46280 29.348 7.31e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi802g00014 K13111 - gmx:100775852 389.808